Table 1. Kinetic parameters for nucleotide insertion and extension by KF-AtPolIB exo− opposite canonical and AP sites.
Template | Incoming nucleotide | K M (μM) | k cat (min−1) | k cat/KM | f cat relative thymine-dATP |
---|---|---|---|---|---|
Insertion opposite T | |||||
dATP | 0.7605 ± 0.15 | 1.9722 ± 0.04 | 2.59 ± 0.26 | 1 | |
dTTP | 261.6 ± 59 | 0.3019 ± 0.02 | 1.154 × 10−3 ± 0.003 | 4.45 × 10−4 (↓ 2247 x) | |
dGTP | 24.8 ± 5.1 | 0.37 ± 0.01 | 1.48 × 10−2 ± 0.003 | 5.74 × 10−3 (↓ 174 x) | |
dCTP | 185.3 ± 38.8 | 0.11545 ± 0.01 | 6.23 × 10−4 ± 0.0004 | 2.40 × 10−4 (↓ 4166 x) | |
Insertion opposite AP site | |||||
dATP | 7.2 ± 0.57 | 1.464 ± 0.04 | 0.202 ± 0.0633 | 0.08 | |
dTTP | 40.8 ± 2.99 | 0.8248 ± 0.015 | 2.02 × 10−2 ± 0.004 | 7.7 × 10−3 (↓ 10 x) | |
dGTP | 51.95 ± 3.52 | 0.9973 ± 0.02 | 1.91x 10−2 ± 0.004 | 7.3 × 10−3 (↓ 11 x) | |
dCTP | 186.9 ± 30.9 | 0.2071 ± 0.025 | 1.11 × 10−3 ± 0.0004 | 4.2 × 10−4 (↓ 190 x) | |
Extension with dGTP (X) | |||||
A-AP site (X)-C | 18.41 ± 2.32 | 0.184 ± 0.006 | 1.0 × 10−2 ± 0.0024 | 3.9 × 10−3 |