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. 2017 Apr 27;24(5):487–498. doi: 10.1093/dnares/dsx019

Figure 5.

Figure 5

Alignments of regions including numts versus the same regions without numts, when polymorphic. The sequence indicated as ‘with_numt’ is identical to the Sscrofa10.2 reference region, the sequence defined as ‘without_numt’ indicates the sequence obtained by Sanger sequencing of the fragments that do not include the numt (Fig. 4). These regions where polymorphic in the population and their sequence were submitted in EMBL database with the following accession numbers: Numt 3_15, LT707410 with numt, LT707411 without numt; Numt 8_10, LT707410 with numt, LT707411 without numt; Numt 13_32, LT707412 without numt, the sequence with numt is the same present in Sscrofa10.2. Primer regions used for the amplification are included in the reported sequences: see Supplementary Table S2 for the black and white version to identify the primer sequences; primer regions are highlighted in green in the online colour picture.