Table 2. A summary of top-scoring (≥ 0.95) Listeria monocytogenes serotype 1/2a signatures generated by Neptune relative to a serotype 4b background. These signatures were mapped against L. monocytogenes 1/2a EGD-e (NC_003210) and 08-5578 (NC_013766) to infer annotations.
| Rank | Score | Length | Locus Information | L. monocytogenes |
|---|---|---|---|---|
| (bp) | Serotype 1/2a str. | |||
| EGD-e coordinates | ||||
| 1 | 0.99 | 4830 | Peptidoglycan-bound protein colossin A | 2 653 185–2 658 013 |
| 2 | 0.99 | 5336 | Phosphotransferase system (PTS), L-ascorbate (L-Asc) family | 2 042 111–2 047 447 |
| 3 | 0.99 | 4059 | bvrABC locus, β-glucoside-specific sensory system | 2 872 894–2 876 952 |
| 4 | 0.99 | 5454 | PTS, glucose–glucoside (Glc) family | 764 364–769 817 |
| 5 | 0.98 | 1938 | Hypothetical | 776 415–778 355 |
| 6 | 0.98 | 4514 | Two-component response regulator and ATP-binding cassette (ABC) transport systems | 1 086 579–1 091 092 |
| 7 | 0.98 | 2839 | Internalin | 169 228–172 066 |
| 8 | 0.98 | 1673 | Glycosyl-transferase | 532 558–534 230 |
| 9 | 0.97 | 967 | Hypothetical | 2 717 382–2 718 348 |
| 10 | 0.96 | 169 | Hypothetical, partial | 270 157–270 325 |
| 11 | 0.96 | 2591 | Lineage II-specific heat shock system | 441 513–444 103 |
| 12 | 0.95 | 548 | Hypothetical | 804 275–804 822 |