Table 3. A summary of top-scoring (≥ 0.95) Listeria monocytogenes serotype 4b signatures generated by Neptune relative to a serotype 1/2a background. The signatures were mapped to L. monocytogenes strain 4b F2365 (NC_002973) to infer annotations.
| Rank | Score | Length | Locus Information | L. monocytogenes |
|---|---|---|---|---|
| (bp) | Serotype 4b str. | |||
| F2365 coordinates | ||||
| 1 | 0.99 | 223 | Hypothetical | 478 246–478 468 |
| 2 | 0.99 | 3081 | gltA–gltB operon | 2 787 943–2 791 023 |
| 3 | 0.99 | 4004 | N-acetylmuramic acid metabolism | 1 685 737–1 689 738 |
| 4 | 0.98 | 1709 | Cell wall anchor | 2 684 246–2 685 954 |
| 5 | 0.97 | 1786 | RHS repeat-containing protein (partial) | 471 882–473 667 |
| 6 | 0.97 | 4912 | RHS repeat-containing protein (partial) | 466 603–471 499 |
| 7 | 0.97 | 5917 | Multiple, including: hypothetical, cell surface membrane anchor, multidrug efflux transporter-like | 428 382–434 298 |
| 8 | 0.97 | 1785 | Pyruvyl-transferase | 117 970–199 754 |
| 9 | 0.95 | 1654 | Teichoic acid biosynthesis | 2 190 231–2 191 883 |
| 10 | 0.95 | 1741 | Serine protease | 1 924 193–1 925 933 |