Table 3.

Fungal Species Used for Phylogenetic Analysis in This Study

Species	Class	Order	Ecological Role	Download Source	References
G. morbida	Sordariomycetes	Hypocreales	Pathogen	—	Schuelke et al. (2016)
G. flava	Sordariomycetes	Hypocreales	Nonpathogen	—	–
G. putterillii	Sordariomycetes	Hypocreales	Nonpathogen	—	–
A. chrysogenum	Sordariomycetes	Hypocreales	Beneficial	FungalEnsembl	Terfehr et al. (2014)
S. grisellum	Sordariomycetes	Hypocreales	Saprotrophic	JGI	Used with permission
Trichoderma virens	Sordariomycetes	Hypocreales	Mycoparasite	JGI	Kubicek et al. (2011)
Trichoderma reesei	Sordariomycetes	Hypocreales	Saprotrophic	FungalEnsembl	Martinez et al. (2008)
Escovopsis weberi	Sordariomycetes	Hypocreales	Mycoparasite	EnsemblGenomes	de Man et al. (2016)
Ustilaginoidea virens	Sordariomycetes	Hypocreales	Biotrophic pathogen	FungalEnsembl	Zhang et al. (2014)
C. militaris	Sordariomycetes	Hypocreales	Insect pathogen	FungalEnsembl	Zheng et al. (2011)
M. inundatum	Sordariomycetes	Hypocreales	Saprotrophic	JGI	Used with permission
F. solani	Sordariomycetes	Hypocreales	Necrotrophic pathogen	FungalEnsembl	Coleman et al. (2009)
Fusarium graminearum	Sordariomycetes	Hypocreales	Necrotrophic pathogen	FungalEnsembl	Trail et al. (2003), Cuomo et al. (2007) and Ma et al. (2010)
C. platani	Sordariomycetes	Microascales	Pathogen	FungalEnsembl	Belbahri (2015)
Neurospora crassa	Sordariomycetes	Sordariales	Saprotrophic	FungalEnsembl	Galagan et al. (2003)
Chaetomium globosum	Sordariomycetes	Sordariales	Saprotrophic	JGI	Berka et al. (2011)
Grosmannia clavigera	Sordariomycetes	Ophiostomatales	Pathogen	FungalEnsembl	DiGuistini et al. (2011)
Eutypa lata	Sordariomycetes	Xylariales	Pathogen	JGI	Blanco-Ulate et al. (2013)
Botrytis cinerea	Leotiomycetes	Helotiales	Necrotrophic pathogen	FungalEmsebl	Amselem et al. (2011) and Staats and van Kan (2012)
Oidiodendron maius	Leotiomycetes	Incertae sedis	Mycorrhizal	JGI	Kohler et al. (2015)

Note.—The species in bold were utilized for positive selection analysis.