Table 4.
Length-Based Statistics for Geosmithia morbida, Geosmithia flava, and Geosmithia putterillii Generated with QUAST v2.3
| Species | Est. Genome Size (Mb) | k-mer for ABySS Assembly | Scaffold Count | Largest Scaffold | NG50 | LG50 | Genome Completeness | Predicted Proteins | Transcript Completenessb |
|---|---|---|---|---|---|---|---|---|---|
| G. morbida | 26.5 | NAa | 73 | 2,597,956 | 1,305,468 | 7 | 98 | 6,273 | 93 |
| G. flava | 29.6 | 91 | 1,819 | 1,534,325 | 460,430 | 22 | 98 | 6,976 | 94 |
| G. putterillii | 30.0 | 91 | 320 | 2,758,267 | 1,379,352 | 9 | 98 | 7,086 | 94 |
Note.—The average GC content for G. morbida, G. flava, and G. putterillii equals 54%, 52%, and 55.5%, respectively. All genome completeness values were produced with BUSCO v1.1b1. These percentages represent genes that are complete and not duplicated or fragmented. NG50 is the scaffold length such that considering scaffolds of equal or longer length produce 50% of the bases of the reference genome. LG50 is the number of scaffolds with length NG50.
Genome assembly for G. morbida was constructed using AllPaths-LG (v49414). See Schuelke et al. (2016) for further details.
These percentages were computed using the fungal data set 9 provided with BUSCO.