Table 3.
Comparison of cellulose machinery across four gut fungal strains
| Number of transcripts (# dockerin containing transcripts)a | ||||
|---|---|---|---|---|
| C. churrovis | N. californiae | A. robustus | P. finnis | |
| Hemicellulases | ||||
| GH11–12 | 63 (6) | 67 (15) | 30 (8) | 35 (9) |
| GH11 | 60 (6) | 59 (14) | 30 (8) | 31 (9) |
| GH43 | 59 (10) | 35 (15) | 16 (12) | 11 (9) |
| GH10 | 15 (2) | 67 (25) | 15 (6) | 16 (7) |
| GH39 | 3 (2) | 9 (8) | 4 (4) | 1 (1) |
| GH30 | 2 (2) | 2 (1) | 2 (2) | 1 (1) |
| Accessory enzymes | ||||
| Carbohydrate esterase | 47 (1) | 43 (7) | 28 (3) | 22 (5) |
| Pectin lyase | 45 (2) | 35 (0) | 5 (0) | 9 (0) |
| Polysaccharide deacetylase | 42 (1) | 93 (2) | 58 (2) | 48 (2) |
| Rhamnogalacturonate lyase | 4 (3) | 4 (1) | 3 (1) | 2 (1) |
| Pectinesterase | 4 (0) | 12 (0) | 5 (0) | 6 (0) |
| GH88 | 0 (0) | 2 (2) | 0 (0) | 1 (1) |
| Cellulases | ||||
| GH9 | 29 (11) | 25 (13) | 15 (9) | 12 (9) |
| GH6 | 27 (8) | 22 (18) | 5 (3) | 8 (7) |
| GH45 | 26 (12) | 24 (14) | 13 (7) | 11 (7) |
| GH48 | 25 (5) | 24 (17) | 7 (5) | 14 (7) |
| GH1 | 20 (0) | 16 (0) | 11 (0) | 9 (0) |
| GH5 | 19 (1) | 48 (25) | 22 (8) | 27 (9) |
| GH3 | 16 (3) | 33 (4) | 16 (3) | 12 (2) |
| GH16 | 3 (1) | 15 (6) | 9 (2) | 5 (2) |
| GH8 | 2 (1) | 4 (2) | 1 (1) | 1 (1) |
| GH31 | 1 (0) | 7 (0) | 6 (0) | 1 (0) |
| Total | 512 (77) | 646 (189) | 301 (84) | 283 (89) |
aDockerin containing transcripts are expected to participate in cellulosome complex formation and the number shown in parentheses indicates the number of transcripts that contain at least one of these domains