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. 2017 Nov 21;90:71–118. doi: 10.1016/j.simyco.2017.11.002

Table 1.

Isolates and accession numbers used in the phylogenetic analyses. Isolates/sequences in bold were isolated/sequenced in the present study.

Taxon Host/substrate Strain Specimen voucher no. Ex-type status GenBank accession numbers
ITS LSU SSU rpb2 tef1 tub2
Allocucurbitaria botulispora Superficial tissue CBS 142452 CBS H-23028 holo LT592932 LN907416 – LT593070 – LT593001
Alternaria alternata Arachis hypogaea CBS 916.96 = AFTOL-ID 1610 IMI 254138 epi1 KF465761 DQ678082 KC584507 KC584375 DQ677927 –
Astragalicola amorpha Astragalus angustifolius CBS 142999 = C227a WU 35994 holo MF795753 MF795753 – MF795795 MF795842 MF795883
Coniothyrium palmarum Chamaerops humilis petioles CBS 400.71 = AFTOL-ID 1379 CBS H-10891 AY720708 JX681084 AY642513 DQ677956 DQ677903 KT389792
Cucitella opali Acer opalus CBS 142405 = FV WU 35995 holo MF795754 MF795754 MF795837 MF795796 MF795843 MF795884
Cucurbitaria berberidis Berberis vulgaris CBS 130007 = CB1 = MFLUCC 11-0384 WU 31405 epi MF795758 MF795758 – MF795800 – –
Berberis vulgaris CBS 394.84 CBS H-11629 – GQ387605 GQ387544 genome2 genome2 genome2
Berberis vulgaris CB WU 31405 MF795757 MF795757 – MF795799 MF795846 MF795887
Berberis vulgaris ssp. atropurpurea C39 WU 35986 MF795755 MF795755 – MF795797 MF795844 MF795885
Berberis sp. CBS 142401 = C241 WU 35987 MF795756 MF795756 – MF795798 MF795845 MF795886
C.oromediterranea Berberis cretica CB2 WU 35989 MF795763 MF795763 – MF795805 MF795851 MF795892
Berberis hispanica CB3 WU 35992 MF795764 MF795764 – MF795806 MF795852 –
Berberis hispanica C29 WU 35990 MF795759 MF795759 – MF795801 MF795847 MF795888
Berberis hispanica C86 WU 35991 MF795760 MF795760 – MF795802 MF795848 MF795889
Berberis cretica CBS 142399 = C229 WU 35988 holo MF795761 MF795761 – MF795803 MF795849 MF795890
Berberis aetnensis C265 WU 35993 MF795762 MF795762 – MF795804 MF795850 MF795891
Didymella exigua Rumex arifolius CBS 183.55 CBS H-20123 neo GU237794 EU754155 EU754056 EU874850 – GU237525
Dothidotthia symphoricarpi Symphoricarpos rotundifolius CBS 119687 BPI 871823 epi – EU673273 EU673224 genome2 genome2 genome2
Fenestella fenestrata Alnus glutinosa CBS 143001 = FP9 WU 35996 epi MF795765 MF795765 – MF795807 MF795853 MF795893
Leptosphaeria doliolum Urtica dioica CBS 505.75 CBS H-13882 JF740205 GU301827 GU296159 KT389640 GU349069 JF740144
Leptosphaerulina australis Eugenia aromatica CBS 317.83 CBS H-13980 GU237829 GU301830 GU296160 GU371790 GU349070 GU237540
Massarina eburnea Fagus sylvatica CBS 473.64 – AF383959 GU301840 GU296170 GU371732 GU349040 genome
Neocucurbitaria acanthocladae Genista acanthoclada CBS 142398 = C225 WU 35997 holo MF795766 MF795766 – MF795808 MF795854 MF795894
N.acerina Acer pseudoplatanus C26a WU 35999 MF795767 MF795767 – MF795809 MF795855 MF795895
Acer pseudoplatanus CBS 142403 = C255 WU 35998 MF795768 MF795768 – MF795810 MF795856 MF795896
Acer campestre MFLUCC 16-1450 MFLU 16-2710 holo KY563073 KY563076 – – – –
N.aetnensis Genista aetnensis CBS 142404 = C261 WU 36929 holo MF795769 MF795769 – MF795811 MF795857 MF795897
Genista aetnensis C270 WU 36930 MF795770 MF795770 – MF795812 MF795858 MF795898
N.aquatica Sea water CBS 297.74 CBS H-16102 holo LT623221 EU754177 – LT623278 – LT623238
N.cava Unknown CBS 115979 – AY853248 EU754198 – LT623273 – LT623234
Wheat-field soil CBS 257.68 CBS H-20320 epi JF740260 EU754199 – LT717681 – KT389844
N.cinereae Genista cinerea CBS 142406 = KU9 WU 36931 holo MF795771 MF795771 – MF795813 MF795859 MF795899
N.cisticola Cistus monspeliensis CBS 142402 = C244 WU 36932 holo MF795772 MF795772 – MF795814 MF795860 MF795900
N.hakeae Hakea sp. CBS 142109 CBS H-22894 holo KY173436 KY173526 – KY173593 – KY173613
N.irregularis Subcutaneous tissue CBS 142791 CBS H-23029 holo LT592916 LN907372 – LT593054 – LT592985
N.juglandicola Juglans regia CBS 142390 = BW6 WU 36933 holo MF795773 MF795773 – MF795815 MF795861 MF795901
N.keratinophila Man corneal scrapings CBS 121759 CBS H-20122 holo EU885415 LT623215 – LT623275 – LT623236
N.populi Populus sp. CBS 142393 = C28 WU 36934 holo MF795774 MF795774 – MF795816 MF795862 MF795902
N.quercina Quercus robur CBS 115095 CBS H-23205 neo LT623220 GQ387619 GQ387558 LT623277 – LT623237
N.rhamni Rhamnus frangula CBS 142391 = C1 WU 36935 epi MF795775 MF795775 MF795838 MF795817 MF795863 –
Rhamnus frangula C112 WU 36936 MF795776 MF795776 – MF795818 MF795864 MF795903
Rhamnus frangula C133 WU 36944 MF795777 MF795777 – MF795819 MF795865 MF795904
Rhamnus frangula C190 WU 36945 MF795778 MF795778 – MF795820 MF795866 –
Rhamnus saxatilis C277 WU 36943 MF795779 MF795779 – MF795821 MF795867 MF795905
N.rhamnicola Rhamnus lycioides CBS 142396 = C185 WU 36946 holo MF795780 MF795780 – MF795822 MF795868 MF795906
Rhamnus alaternus KRx WU 36947 MF795781 MF795781 – MF795823 MF795869 MF795907
N.rhamnioides Rhamnus myrtifolius CBS 142395 = C118 WU 36948 holo MF795782 MF795782 – MF795824 MF795870 MF795908
Rhamnus saxatilis ssp. prunifolius C222 WU 36949 MF795783 MF795783 MF795839 MF795825 MF795871 MF795909
Rhamnus saxatilis ssp. prunifolius C223 WU 36950 MF795784 MF795784 – MF795826 MF795872 MF795910
N.ribicola Ribes rubrum CBS 142394 = C55 WU 36951 holo MF795785 MF795785 MF795840 MF795827 MF795873 MF795911
Ribes rubrum C155 WU 36952 MF795786 MF795786 – MF795828 MF795874 MF795912
N.unguis-hominis Agapornis sp. Lung CBS 111112 – LT623222 GQ387623 – LT623279 – LT623239
N.vachelliae Vachellia gummifera CBS 142397 = C192 WU 36953 holo MF795787 MF795787 – MF795829 MF795875 MF795913
Neopyrenochaeta acicola Waterpipe CBS 812.95 CBS H-20314 neo LT623218 GQ387602 GQ387541 LT623271 – LT623232
N.fragariae Fragaria ananassa CBS 101634 CBS H-23206 holo LT623217 GQ387603 GQ387542 LT623270 – LT623231
N.inflorescentiae Protea neriifolia CBS 119222 PREM 58657 holo EU552153 EU552153 – LT623272 – LT623233
N.telephoni Screen of a mobile phone CBS 139022 MCC H1001 holo KM516291 KM516290 – LT717685 – LT717678
Neopyrenochaetopsis hominis Superficial tissue CBS 143033 CBS H-23207 holo LT592923 LN907381 – LT593061 – LT592992
Paracucurbitaria corni Fraxinus excelsior with bacterial canker CBS 248.79 CBS H-16563 LT903672 GQ387608 – LT903673 – LT900365
P.italica Olea europaea CBS 234.92 CBS H-16104 holo LT623219 EU754176 EU754077 LT623274 – LT623235
Parafenestella mackenziei Rosa canina MFLUCC 16-1451 MFLU 16-0181 holo KY563071 KY563074 – – – –
P.ostryae Ostrya carpinifolia MFLUCC 17-0097 MFLU 16-0184 holo KY563072 KY563075 – – – –
P.pseudoplatani Acer pseudoplatanus CBS 142392 = C26 WU 36954 holo MF795788 MF795788 – MF795830 MF795876 MF795914
Phaeosphaeria ammophilae Ammophila arenaria AA WU 36958 MF795789 MF795789 – MF795831 MF795877 –
P.oryzae Oryza sativa CBS 110110 BPI 744438 epi KF251186 KF251689 GQ387530 KF252193 – KF252680
Phaeosphaeriopsis glaucopunctata Ruscus aculeatus CBS 653.86 – KF251199 KF251702 GQ387531 KF252206 KF253155 KF252693
Phoma herbarum Rosa multiflora CBS 615.75 – FJ427022 EU754186 EU754087 KP330420 – KF252703
Plenodomus hendersoniae Salix appendiculata LTO WU 36959 MF795790 MF795790 – MF795832 MF795878 –
Pleospora herbarum Medicago sativa leaf CBS 191.86 BPI 444817 iso DQ491516 DQ247804 DQ247812 DQ247794 DQ471090 AY749032
Protofenestella ulmi Ulmus minor CBS 143000 = FP5 WU 36955 holo MF795791 MF795791 – MF795833 MF795879 MF795915
Ulmus glabra CBS 114122 UPS F-178445 – GU205220 GU205238 – – –
Pseudopyrenochaeta lycopersici Lycopersicon esculentum CBS 306.65 CBS H-17628 iso NR103581 EU754205 EU754106 LT717680 – LT717674
P.terrestris Soil CBS 282.72 FMR H-15327 holo LT623228 LT623216 – LT623287 – LT623246
Pyrenochaeta nobilis Laurus nobilis leaves CBS 407.76 = AFTOL-ID 1856 CBS H-500 neo MF795792 MF795792 DQ898287 MF795834 MF795880 MF795916
Pyrenochaetopsis americana Unknown UTHSC DI16-225 FMR H-13715 holo LT592912 LN907368 – LT593050 – LT592981
P.botulispora Respiratory tract CBS 142458 CBS H-23035 holo LT592946 LN907441 – LT593085 – LT593015
P.confluens Deep tissue/fluids CBS 142459 CBS H-23036 holo LT592950 LN907446 – LT593089 – LT593019
P.globosa Superficial tissue CBS 143034 CBS H-23208 holo LT592934 LN907418 – LT593072 – LT593003
P.leptospora Secale cereale CBS 101635 CBS H-20313 epi MF795793 MF795793 MF795841 MF795835 MF795881 MF795917
P.uberiformis Superficial tissue CBS 142461 CBS H-23038 holo LT592935 LN907420 – LT593074 – LT593004
Seltsamia ulmi Ulmus glabra CBS 143002 = L150 WU 36957 holo MF795794 MF795794 MF795794 MF795836 MF795882 MF795918
Staurosphaeria aptrootii Lycium sp. CBS 483.95 CBS H-23068 holo KY929149 GU301806 GU296141 – GU349044 –
Trematosphaeria pertusa Fraxinus excelsior CBS 122368 IFRD 2002 epi AB809646 FJ201990 FJ201991 genome2 genome2 genome2
Xenopyrenochaetopsis pratorum Lolium perenne CBS 445.81 CBS H-7625 iso JF740263 GU238136 GU238228 KT389671 – KT389846
1

Ex-epitype of Alternaria tenuis Nees.

2

Sequence retrieved from genome deposited at JGI-DOE (http://genome.jgi.doe.gov/).