Table 2. Age of the association between H. suis and its different hosts.
Nodes |
BEAST (years BP) |
Linear regression (years BP)a |
|||||
---|---|---|---|---|---|---|---|
Median | 95% HPD lower | 95% HPD upper | Prediction | 95% lower | 95% upper | ||
Rb | Root | — | — | — | 195 505 | 193 118 | 197 704 |
MP | M. fascicularis/pigs | 106 580 | 71 649 | 146 650 | 93 399 | 92 408 | 94 319 |
F | M. fascicularis | 52 972 | 36 279 | 73 270 | 60 348 | 59 765 | 60 893 |
EA | Euroasian/Asian | — | — | — | 15 139 | 15 038 | 15 236 |
E | Euroasian | — | — | — | 13 135 | 13 051 | 13 216 |
A | Asian | 12 263 | 7358 | 17 547 | 11 620 | 11 549 | 11 689 |
Abbreviation: HPD, highest posterior density.
For nodes A, F and MP, as indicated in Figure 1a, the age of the association between H. suis and its hosts was determined using BEAST. For the other nodes in the ClonalFrame tree (Figure 1a), the ages were inferred by applying linear regression between the coalescent time calculated by Clonalframe and the log10 of the TMRCA inferred by BEAST.
Years BP=10^[3204 (Lower: 3197; Upper: 3210) × Coalescent Unit+3765 (Lower: 3763; Upper: 3767)] R2= 0,942.
As indicated in Figure 1.