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. 2017 Sep 8;12(1):77–86. doi: 10.1038/ismej.2017.145

Table 2. Age of the association between H. suis and its different hosts.

Nodes   BEAST (years BP)
Linear regression (years BP)a
    Median 95% HPD lower 95% HPD upper Prediction 95% lower 95% upper
Rb Root 195 505 193 118 197 704
MP M. fascicularis/pigs 106 580 71 649 146 650 93 399 92 408 94 319
F M. fascicularis 52 972 36 279 73 270 60 348 59 765 60 893
EA Euroasian/Asian 15 139 15 038 15 236
E Euroasian 13 135 13 051 13 216
A Asian 12 263 7358 17 547 11 620 11 549 11 689

Abbreviation: HPD, highest posterior density.

For nodes A, F and MP, as indicated in Figure 1a, the age of the association between H. suis and its hosts was determined using BEAST. For the other nodes in the ClonalFrame tree (Figure 1a), the ages were inferred by applying linear regression between the coalescent time calculated by Clonalframe and the log10 of the TMRCA inferred by BEAST.

a

Years BP=10^[3204 (Lower: 3197; Upper: 3210) × Coalescent Unit+3765 (Lower: 3763; Upper: 3767)] R2= 0,942.

b

As indicated in Figure 1.