Table 2.
DNA methylation analysis |
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---|---|---|---|---|---|---|---|
In silico analysis |
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Pyrosequencing | ML | Methylcapture sequencing data | Methylation array data from TCGA data | Methylation array data from GEO (GSE48684) | Protein expression analysis | ||
Colorectal tissue | Normal | 11 | 17 | 11 | |||
NAT | 15 | 6 | 39 | ||||
Adenoma | 15 | 11 | 15 | 42 | 11 | ||
CRC | 15 | 10 | 9 | 39 | 64 | 10 | |
Plasma | Normal | 47 | |||||
Adenoma | 37 | ||||||
CRC | 37 | ||||||
∑ | 45 | 153 | 30 | 78 | 123 | 32 |
ML: MethyLight reaction; NAT: Normal adjacent tissue; CRC: Colorectal cancer; TCGA: The Cancer Genome Atlas; Gene Expression Omnibus