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. 2017 Oct 31;8(63):106976–106988. doi: 10.18632/oncotarget.22202

Table 4. SNPs- and small InDels-related OMIM genes and clinical phenotypes.

Gene Chromosome OMIM Gene description Function
NACA Chr12 601234 gene encodes a protein that associates with BTF3 to form NAC skeletal development
PCDHB4 Chr5 606330 a member of the protocadherin beta gene cluster cell-cell neural connections
PEX5 Chr12 600414 peroxisomal biogenesis factor 5 Peroxisome biogenesis disorder 2A, 2B; Rhizomelic chondrodysplasia punctata, type 5
PRR21 Chr2 - - -
CTBP1 Chr4 602618 gene encodes a protein that binds to the C-terminus of adenovirus E1A proteins transcriptional repressor and cellular proliferation
FAM47C ChrX - - -
UBXN11 Chr1 609151 a protein with a divergent C-terminal UBX domain affect the actin cytoskeleton and alter cell shape
ODF2L Chr1 - - -
DSPP Chr4 125485 a member of the small integrin-binding ligand N-linked glycoprotein family of proteins Deafness, autosomal dominant 39, with dentinogenesis; Dentin dysplasia, type II; Dentinogenesis imperfecta, Shields type II, III
PKD2 Chr4 173910 a member of the polycystin protein family Polycystic kidney disease 2
KRTAP5-7 Chr11 - - -
CELA1 Chr12 130120 Elastases form a subfamily of serine proteases that hydrolyze many proteins in addition to elastin evolutionarily silenced in pancreatic acinar cells
ACAN Chr15 155760 a member of the aggrecan/versican proteoglycan family Osteochondritis dissecans, short stature, and early-onset osteoarthritis; Spondyloepimetaphyseal dysplasia, aggrecan type; Spondyloepiphyseal dysplasia, Kimberley type
ESX1 ChrX 300154 gene encodes a dual-function 65 kDa protein that undergoes proteolytic cleavage to produce a 45 kDa N-terminal fragment with a paired-like homeodomain and a 20 kDa C-terminal fragment with a proline-rich domain placental development and spermatogenesis
BAGE5 Chr22 - - -
POU3F3 Chr2 602480 a member of the class III POU family of transcription factors expressed in the central nervous system
ATXN2 Chr12 601517 gene belongs to a group of genes that is associated with microsatellite-expansion diseases, a class of neurological and neuromuscular disorders caused by expansion of short stretches of repetitive DNA Spinocerebellar ataxia 2; susceptibility to Amyotrophic lateral sclerosis; susceptibility to Parkinson disease, late-onset
GPSM1 Chr9 609491 gene encodes a receptor-independent activator of G protein signaling, influence the basal activity of G-protein signaling systems
MYO15B Chr17 - - -
OR7E24 Chr19 - - -
SPACA6P Chr19 - - -
PDHA1 ChrX 300502 a nuclear-encoded mitochondrial multienzyme complex that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2), and provides the primary link between glycolysis and the tricarboxylic acid cycle Pyruvate dehydrogenase E1-alpha deficiency