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. 2017 Dec 21;17:261. doi: 10.1186/s12870-017-1206-0

Table 2.

Pfam analysis of MTase candidate genes in rice and Arabidopsis

Gene Source Accession Description Position Gene Source Accession Description Position
(m2 2G)Trm1 Pfam PF02005 m22G tRNA meth_tr 33–490 (mcm5U)Trm9 Pfam PF08241 Methyltransferase domain 50–141
AT3G02320 pfam PF02005 m22G tRNA meth_tr 11–466 AT1G36310 pfam PF08241 Methyltransferase type 11 112–202
AT5G15810 pfam PF02005 m22G tRNA meth_tr 109–564 LOC_Os02g51490 HMMPfam PF08241.5 Methyltransf_11 106–196
LOC_Os10g21360 pfam PF02005.9 TRM 58–438
LOC_Os03g57280 pfam PF02005.9 TRM 19–476 (m1G)Trm10 Pfam PF01746 tRNA (Guanine-1)-meth_tr 104–276
AT5G47680 pfam PF01746 tRNA (guanine-N1-)-meth_tr 128–293
(m5U)Trm2 Pfam PF01938 (Uracil-5)-meth_tr 164–227 LOC_Os02g49360 PF01746.14 tRNA_m1G_MT 128–293
AT3G21300 pfam PF05958 (Uracil-5)-meth_tr 354–552
LOC_Os01g09750 HMMPfam PF05958.4 tRNA_U5-meth_tr 366–554 (m2G)Trm11 Pfam PF01170 Putative RNA methylase family UPF0020 184–297
AT3G26410 pfam PF01170 Putative RNA methylase 193–315
(Gm)Trm3 Pfam PF00588 tRNA/rRNA meth_tr, SpoU 1286–1428 LOC_Os02g35060 pfam PF01170.11 UPF0020 193–315
AT4G17610 pfam PF00588 tRNA/rRNA meth_tr, SpoU 1700–1842
LOC_Os03g01110 HMMPfam PF00588.12 SpoU_methylase 1575–1716 (Am)Trm13 Pfam PF11722 CCCH zinc finger in TRM13 protein 18–47
Pfam PF05253 U11-48 K-like CHHC zinc finger 71–97
(m5C)Trm4 Pfam PF01189 NOL1/NOP2/sun family 254–581 Pfam PF05206 Methyltransferase TRM13 179–473
At4g40000 pfam PF01189 NOL1/NOP2/sun family 155–350 AT4G01880 pfam PF05206 Methyltransferase TRM13 167–445
At2g22400 pfam PF01189 NOL1/NOP2/sun family 163–361 pfam PF05253 U11-48 K-like CHHC zinc finger domain 42–66
LOC_Os09g29630 HMMPfam PF01189.10 Nol1_Nop2_Fmu 168–364 pfam PF11722 Zinc finger, CCCH-type, TRM13 7–36
LOC_Os08g37780 HMMPfam PF01189.10 Nol1_Nop2_Fmu 185–388 LOC_Os03g61750 pfam PF11722.1 zf-TRM13_CCCH 20–49
pfam PF05253.5 zf-U11-48 K 61–86
(m1G)Trm5 Pfam PF02475 tRNA transferase Trm5/Tyw2 177–436 pfam PF05206.7 TRM13 181–247
AT3G56120 pfam PF02475 tRNA transferase Trm5/Tyw2 116–411
AT4G27340 pfam PF02475 tRNA transferase Trm5/Tyw2 343–542 (m1A)Trm61 Pfam PF08704 tRNA meth_tr complex GCD14 subunit 72–362
LOC_Os01g29409 HMMPfam PF02475.9 Met_10 309–505 AT5G14600 pfam PF08704 tRNA meth_tr complex GCD14 subunit 9–313
LOC_Os02g39370 HMMPfam PF02475.9 Met_10 156–442 LOC_Os04g25360 HMMPfam PF08704.3 GCD14 14–321
LOC_Os04g25990 pfam PF08704.3 GCD14 14–320
(Cm)Trm7 Pfam PF01728 FtsJ-like meth_tr 21–207
AT5G01230 pfam PF01728 Ribosomal RNA meth_tr RrmJ/FtsJ 21–209 (m3C)Trm140 Pfam PF08242 Methyltransferase domain 439–543
AT4G25730 pfam PF01728 Ribosomal RNA meth_tr RrmJ/FtsJ 22–200 AT2G26200 pfam PF08242 Methyltransferase type 12 79–180
AT5G13830 pfam PF01728 Ribosomal RNA meth_tr RrmJ/FtsJ 19–223 AT1G54650 pfam PF08242 Methyltransferase type 12 87–214
LOC_Os06g49140 HMMPfam PF01728.12 FtsJ 21–209 LOC_Os03g04940 pfam PF08242.5 Methyltransf_12 63–163
LOC_Os05g49230 HMMPfam PF01728.12 FtsJ 22–201 pfam PF10294.2 Methyltransf_16 326–485
LOC_Os09g27270 HMMPfam PF01728.12 FtsJ 22–142 LOC_Os07g23169 pfam PF08242.5 Methyltransf_12 96–229
LOC_Os03g60750 HMMPfam PF01728.12 FtsJ 20–231
(m7G)Trm8 Pfam PF02390 Putative meth_tr 74–279
AT5G24840 pfam PF02390 tRNA (guanine-N-7) meth_tr 48–246
AT5G17660 pfam PF02390 tRNA (guanine-N-7) meth_tr 115–305
LOC_Os06g12990 HMMPfam PF02390.10 Methyltransf_4 58–254
LOC_Os01g35170 HMMPfam PF02390.10 Methyltransf_4 2–183