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. 2017 Dec 22;8:2260. doi: 10.1038/s41467-017-02209-5

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© The Author(s) 2017

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 7 — S. epidermidis strains in early stages of an infant gut colonization. a Three coexisting strains were found, with shifting relative abundances. While the three initial samples were dominated by strain 504_SEPI, at later times, strain 236_SEPI was the most abundant. b Whole-genome cladogram of the reference genomes, also including the two high-quality genome sequences (Sharon strain 1 and Sharon strain 3) assembled in the original paper from the same samples. These genomes are closely related to the two strains identified by StrainEst