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. 2017 Dec 18;5:347. doi: 10.3389/fpubh.2017.00347

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Copyright © 2017 Revez, Espinosa, Albiger, Leitmeyer, Struelens and ECDC National Microbiology Focal Points and Experts Group.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Use of whole-genome sequencing (WGS)-based typing of human pathogens in Public Health Reference Laboratories for routine national surveillance by country in the EU/EEA, 2015–16. Dark blue: WGS-based typing used routinely of at least one human pathogen; light blue: national plan in place/in progress for WGS-based typing for surveillance of at least one human pathogen by 2018; orange: no use in 2016 nor national plan for use by 2018; dark gray: no information. (A) 2015 data, cross-validated with EULabCap report (15) and (B) 2016 data.