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. 2017 Dec 22;49:92. doi: 10.1186/s12711-017-0370-x

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© The Author(s) 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Partitioning of genome-wide autozygosity for the 634 Belgian Blue sires using the BovineHD SNP panel. a Boxplot of percentages of individual genomes associated with 13 HBD-classes with pre-defined R _k rates (Mix14R model). The percentages correspond to individual genome-wide probabilities of belonging to each of the HBD-classes. b Genomic inbreeding coefficients estimated with respect to different base populations (F _G-T) obtained by selecting different thresholds T that determine which HBD-classes are considered in the estimation of F _G-T (e.g., setting the base population approximately 0.5 * T generations in the past). The corresponding inbreeding coefficients F _G-T are estimated as the probability of belonging to any of the HBD classes with a R _k ≤ T averaged over the whole genome