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. 2017 Dec 22;49:92. doi: 10.1186/s12711-017-0370-x

Table 4.

Summary statistics for the inbreeding coefficients estimated for the 634 Belgian Blue sires with different methods and using the HD panel

Estimators mean F min F max F
FG 0.303 0.258 0.375
FHOM 0.644 0.621 0.683
FExHOM − 0.001 − 0.066 0.111
FROH 0.151 0.098 0.237
FGRM1 0.031 − 0.150 0.150
FGRM2 0.059 − 0.194 0.245
FUNI 0.017 − 0.092 0.139
FPED* 0.042 0.004 0.091

F G, inbreeding coefficient estimated as the probability of belonging to any of the HBD classes averaged over the whole genome; F HOM, inbreeding coefficient based on the proportion of homozygous SNPs; F ExHOM, excess homozygosity estimator; F ROH, inbreeding coefficient estimated as the proportion of the genome captured by ROH; F GRM1, inbreeding coefficient based on the diagonal elements of the genomic relationship matrix (dividing all SNP contributions by the same denominator); F GRM2, inbreeding coefficient based on the diagonal elements of the genomic relationship matrix (dividing each SNP contribution by its own weight 2f i (1 − f i), f i being the frequency of allele i); F UNI, inbreeding coefficient based on the correlation between uniting gametes; F PED, inbreeding coefficient estimated from pedigree data

*Estimated on the 313 bulls born after 1999