Table 4.
Summary statistics for the inbreeding coefficients estimated for the 634 Belgian Blue sires with different methods and using the HD panel
Estimators | mean F | min F | max F |
---|---|---|---|
FG | 0.303 | 0.258 | 0.375 |
FHOM | 0.644 | 0.621 | 0.683 |
FExHOM | − 0.001 | − 0.066 | 0.111 |
FROH | 0.151 | 0.098 | 0.237 |
FGRM1 | 0.031 | − 0.150 | 0.150 |
FGRM2 | 0.059 | − 0.194 | 0.245 |
FUNI | 0.017 | − 0.092 | 0.139 |
FPED* | 0.042 | 0.004 | 0.091 |
F G, inbreeding coefficient estimated as the probability of belonging to any of the HBD classes averaged over the whole genome; F HOM, inbreeding coefficient based on the proportion of homozygous SNPs; F ExHOM, excess homozygosity estimator; F ROH, inbreeding coefficient estimated as the proportion of the genome captured by ROH; F GRM1, inbreeding coefficient based on the diagonal elements of the genomic relationship matrix (dividing all SNP contributions by the same denominator); F GRM2, inbreeding coefficient based on the diagonal elements of the genomic relationship matrix (dividing each SNP contribution by its own weight 2f i (1 − f i), f i being the frequency of allele i); F UNI, inbreeding coefficient based on the correlation between uniting gametes; F PED, inbreeding coefficient estimated from pedigree data
*Estimated on the 313 bulls born after 1999