Table 2.
Scaffolds | Total features per scaffold | Exons per gene | Length (bp) of features | Scaffold size | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Shortest | Longest | Total | Average | |||||||||||||
Exons | Introns | Genes | Maxa | Aveb | Exons | Introns | Genes | Exons | Introns | Genes | Exons | Introns | Exons | introns | ||
Chr1 | 66 | 38 | 28 | 9 | 2.4 | 20 | 77 | 209 | 2065 | 3614 | 8778 | 23,780 | 23,480 | 360.3 | 617.9 | 2164–67,845,075 |
Chr2 | 45 | 25 | 20 | 7 | 1.8 | 6 | 69 | 254 | 1283 | 1146 | 4690 | 13,378 | 4853 | 297.3 | 194.12 | 135,092–64,307,455 |
Chr3 | 35 | 14 | 21 | 4 | 1.6 | 3 | 103 | 236 | 2297 | 3392 | 3689 | 15,921 | 11,234 | 454.8 | 802.4 | 25,612–73,118,483 |
Chr4 | 60 | 37 | 23 | 9 | 2.6 | 7 | 66 | 224 | 2732 | 10,968 | 13,188 | 20,569 | 33,993 | 342.8 | 918.7 | 10,238–67,290,539 |
Chr5 | 44 | 25 | 19 | 5 | 2.3 | 19 | 71 | 245 | 2018 | 6695 | 8795 | 12,688 | 25,038 | 288.4 | 1001.5 | 43,486–33,757,957 |
Chr6 | 23 | 12 | 12 | 5 | 1.9 | 31 | 76 | 293 | 1337 | 1060 | 6502 | 7588 | 4018 | 329.9 | 334.8 | 11,607–52,987,788 |
Chr7 | 39 | 18 | 20 | 4 | 2 | 6 | 79 | 224 | 3156 | 2505 | 7905 | 18,860 | 9241 | 483.6 | 513.4 | 41,803–56,863,519 |
Chr8 | 45 | 20 | 25 | 5 | 1.8 | 6 | 71 | 218 | 2858 | 2680 | 4372 | 25,730 | 15,539 | 571.8 | 777 | 10,323–34,152,034 |
Chr9 | 44 | 24 | 20 | 6 | 2.2 | 44 | 69 | 233 | 3614 | 15,338 | 16,668 | 24,142 | 27,308 | 548.7 | 1137.8 | 17,759–55,481,927 |
Chr10 | 38 | 18 | 20 | 5 | 1.9 | 24 | 72 | 212 | 1855 | 6768 | 13,475 | 16,358 | 17,936 | 430.5 | 996.4 | 13,087–53,827,720 |
Super | 2 | 0 | 2 | 2 | 1 | 739 | 0 | 739 | 887 | 0 | 889 | 5695 | 0 | 798.2 | 0 | 4–8,720,612 |
Ava | 40 | 21 | 19 | 6 | 2.1 | 81 | 67 | 275 | 2446 | 5580 | 8141 | 17,958 | 19,777 | 479.1 | 735.4 | 28,289–51,668,465 |
Key to legend: a Maximum; bAverage. This data depicts that the least number of novel genes (2, 1%) were identified in super scaffold, probably owing to its relative smaller size and lower gene density [8] and that highest prediction was from chromosome 1 with 28 genes showing its biggest size