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Summary of parameters used in the PASA pipeline for the annotation comparison and minimum full length ORF size
| Annotation comparison | Minimum full length ORF size | ||
|---|---|---|---|
| Parameters | Minimum % | Parameters | Minimum value |
| Genomic overlap | 50 | Annotation version | 2 |
| Protein coding | 40 | Maximum utr exons | 2 |
| Length for non-full-length compare | 70 | Compare ID | 2 |
| Length for full-length compare | 70 | Trust full length status | 0 |
| Predicted protein compare | 70 | stomp | 0 |
| Alignment length | 70 | Minimum % overlap | 80 |
