Table 1.
Strain | Raw | Clean | Mapped | Ratio | No. of |
---|---|---|---|---|---|
reads | reads | reads | (%)a | RXLRb | |
80029 | 81,170,140 | 78,088,447 | 209,151 | 0.268 | 166 |
F48 | 76,156,500 | 67,813,237 | 121,189 | 0.179 | 147 |
Pa21106 | 71,809,644 | 62,860,454 | 1,577,134 | 2.509 | 226 |
Pc51265 | 60,289,336 | 53,667,578 | 189,841 | 0.354 | 167 |
Pd21410 | 89,624,368 | 79,813,868 | 147,278 | 0.185 | 162 |
All | 379,049,988 | 342,243,584 | 2,244,593 | 0.656 | 245 |
aThe percentage of clean reads belonging to P. infestans in certain sample.
bNumber of RXLR effector genes detected in certain strain.