Table 1.
The ABC gene family in pineapple.
| Group | Transcipt ID | Gene name | Topology | Ch | Length(aa) | MW(Kd) | pI | Main loca. |
|---|---|---|---|---|---|---|---|---|
| Subfamily A, 5 members | ||||||||
| AOH | Aco007263.1 | AcABCA1 | (TMD-NBD)2 | LG23 | 1885 | 209.74 | 7.28 | fruit.S7 |
| ATH | Aco028137.1 | AcABCA2 | TMD-NBD | scaffold_1582 | 967 | 107.06 | 7.81 | Flower |
| Aco006844.1 | AcABCA3 | TMD-NBD | LG01 | 961 | 106.43 | 6.95 | Stamen.S5 | |
| Aco006845.1 | AcABCA4 | TMD-NBD | LG01 | 890 | 99.17 | 8.62 | Ovule.S7 | |
| Aco014363.1 | AcABCA5 | TMD-NBD | LG05 | 947 | 106.5 | 8.76 | Flower | |
| Subfamily B, 18 members | ||||||||
| MDR | Aco010196.1 | AcABCB1 | (TMD-NBD)2 | LG25 | 1252 | 144.98 | 9.32 | Ovule.S1 |
| Aco012952.1 | AcABCB2 | (TMD-NBD)2 | LG03 | 1216 | 139.29 | 9.18 | Petal.S3 | |
| Aco027643.1 | AcABCB3 | TMD-NBD-TMD | scaffold_777 | 992 | 107.44 | 8.91 | Root | |
| Aco016500.1 | AcABCB4 | (TMD-NBD)2 | LG11 | 1613 | 108.46 | 9.03 | Stamen.S4 | |
| Aco022110.1 | AcABCB5 | (TMD-NBD)2 | LG04 | 1294 | 140.81 | 7.89 | fruit.S4 | |
| Aco001135.1 | AcABCB6 | (TMD-NBD)2 | LG02 | 1239 | 136.8 | 8.75 | fruit.S4 | |
| Aco018951.1 | AcABCB7 | (TMD-NBD)2 | LG12 | 1258 | 140.34 | 8.97 | Stamen.S2 | |
| Aco006827.1 | AcABCB8 | (TMD-NBD)2 | LG01 | 1295 | 135.1 | 9.03 | Stamen.S3 | |
| Aco019592.1 | AcABCB9 | (TMD-NBD)2 | LG10 | 978 | 138.8 | 8.68 | Flower | |
| Aco013278.1 | AcABCB10 | (TMD-NBD)2 | LG24 | 1395 | 139.04 | 8.69 | Ovule.S6 | |
| Aco016496.1 | AcABCB11 | (TMD-NBD)2-NBD | LG11 | 1407 | 174.98 | 6.21 | Root | |
| Aco022325.1 | AcABCB12 | (TMD-NBD)2 | LG19 | 1263 | 135.39 | 8.81 | fruit.S1 | |
| Aco003987.1 | AcABCB19 | (TMD-NBD)2 | LG15 | 645 | 151.04 | 6.27 | Stamen.S3 | |
| Aco001486.1 | AcABCB20 | (TMD-NBD)2 | LG18 | 1270 | 155.88 | 6.4 | Stamen.S1 | |
| Aco008863.1 | AcABCB13 | (TMD-NBD)2 | LG09 | 1340 | 132.98 | 8.9 | Stamen.S2 | |
| TAP | Aco007808.1 | AcABCB14 | TMD-NBD | LG21 | 1653 | 70.41 | 7.98 | Stamen.S3 |
| Aco017569.1 | AcABCB15 | TMD-(NBD)2-TMD-NBD | LG09 | 756 | 179.38 | 6.29 | fruit.S4 | |
| Aco015743.1 | AcABCB16 | TMD2-NBD | LG09 | 741 | 82.03 | 9.05 | Ovule.S4 | |
| Aco017326.1 | AcABCB17 | TMD-NBD | LG01 | 755 | 82.29 | 8.86 | Ovule.S2 | |
| ATM | Aco011166.1 | AcABCB18 | TMD-NBD | LG04 | 309 | 82.67 | 9.32 | fruit.S7 |
| Subfamily C, 16 members | ||||||||
| Aco009750.1 | AcABCC1 | (TMD-NBD)2 | LG10 | 1545 | 170.6 | 7.71 | Flower | |
| Aco014828.1 | AcABCC2 | (TMD-NBD)2 | LG14 | 1543 | 173.73 | 6.83 | Ovule.S1 | |
| Aco027927.1 | AcABCC3 | (TMD-NBD)2 | scaffold_1613 | 1544 | 170.76 | 8.16 | Stamen.S5 | |
| Aco019200.1 | AcABCC4 | (TMD-NBD)2 | LG13 | 1404 | 154.1 | 6.18 | Stamen.S4 | |
| Aco010163.1 | AcABCC5 | (TMD-NBD)2 | LG25 | 1522 | 168.42 | 8.27 | Flower | |
| Aco019507.1 | AcABCC6 | (TMD-NBD)2 | LG07 | 2068 | 228.97 | 7.1 | Ovule.S3 | |
| Aco009944.1 | AcABCC7 | (TMD-NBD)2 | LG10 | 1463 | 163.87 | 8.43 | Stamen.S4 | |
| Aco015193.1 | AcABCC8 | (TMD-NBD)2 | LG05 | 1463 | 163.62 | 8.82 | fruit.S3 | |
| Aco000353.1 | AcABCC9 | (TMD-NBD)2 | LG12 | 1491 | 166.33 | 7.94 | Stamen.S5 | |
| Aco005539.1 | AcABCC10 | (TMD-NBD)2 | LG11 | 1485 | 164.82 | 8.42 | Stamen.S1 | |
| Aco006625.1 | AcABCC11 | (TMD-NBD)2 | LG01 | 1583 | 177.22 | 8.71 | Ovule.S2 | |
| Aco025745.1 | AcABCC12 | NBD | LG01 | 348 | 39.08 | 5.29 | Ovule.S1 | |
| Aco016941.1 | AcABCC13 | (TMD-NBD)2 | LG02 | 1285 | 143.55 | 6.29 | Petal.S3 | |
| Aco017858.1 | AcABCC14 | (TMD-NBD)2 | LG23 | 1261 | 140.25 | 6.04 | Sepal.S2 | |
| Aco012910.1 | AcABCC15 | (TMD-NBD)2 | LG03 | 1514 | 169.94 | 8.6 | Leaf | |
| Aco016196.1 | AcABCC16 | TMD-NBD | LG17 | 309 | 33.65 | 9.69 | Ovule.S4 | |
| Subfamily D, 2 members | ||||||||
| Aco023353.1 | AcABCD1 | (TMD-NBD)2 | LG18 | 1342 | 149.88 | 9.16 | Stamen.S5 | |
| Aco010685.1 | AcABCD2 | TND-NBD | LG10 | 750 | 83.8 | 8.48 | Stamen.S3 | |
| Subfamily E, 1 members | ||||||||
| Aco010811.1 | AcABCE1 | NBD2 | LG10 | 605 | 68.22 | 8.04 | Stamen.S5 | |
| Subfamily F, 5 members | ||||||||
| Aco010200.1 | AcABCF1 | NBD3 | LG25 | 601 | 67.25 | 6.07 | Petal.S3 | |
| Aco006898.1 | AcABCF2 | NBD3 | LG22 | 603 | 67.03 | 6.37 | Leaf | |
| Aco009295.1 | AcABCF3 | NBD3 | LG22 | 719 | 79.99 | 5.92 | Stamen.S1 | |
| Aco018812.1 | AcABCF4 | NBD2 | LG13 | 742 | 81.44 | 5.87 | Stamen.S4 | |
| Aco000176.1 | AcABCF5 | NBD3 | LG12 | 717 | 79.54 | 6.07 | fruit.S2 | |
| Subfamily G,42 members | ||||||||
| PDR | Aco005449.1 | AcABCG1 | TMD-NBD-TMD2 | LG11 | 1234 | 140.02 | 7.35 | Sepal.S2 |
| Aco005451.1 | AcABCG2 | (NBD-TMD)2 | LG11 | 1393 | 157.13 | 8.66 | Stamen.S1 | |
| Aco027149.1 | AcABCG6 | (NBD-TMD)2 | scaffold_1231 | 1419 | 159.96 | 8.93 | Sepal.S3 | |
| Aco009786.1 | AcABCG8 | (NBD-TMD)2 | LG10 | 1347 | 151.89 | 8.83 | Flower | |
| Aco006783.1 | AcABCG12 | (NBD-TMD)2 | LG01 | 1456 | 164.5 | 8.47 | fruit.S5 | |
| Aco006142.1 | AcABCG13 | (NBD-TMD)2 | LG16 | 1476 | 166.35 | 6.59 | Sepal.S1 | |
| Aco023493.1 | AcABCG19 | (NBD-TMD)2 | LG01 | 1416 | 160.42 | 7.85 | Stamen.S4 | |
| Aco015369.1 | AcABCG20 | (NBD-TMD)2 | LG23 | 1449 | 161.94 | 8.62 | Stamen.S5 | |
| Aco021666.1 | AcABCG21 | (NBD-TMD)2 | LG07 | 1282 | 145.07 | 8.65 | fruit.S1 | |
| Aco009791.1 | AcABCG31 | (NBD-TMD)2 | LG10 | 1452 | 165.01 | 8.77 | Ovule.S7 | |
| Aco006143.1 | AcABCG36 | (NBD-TMD)2 | LG16 | 1410 | 158.85 | 6.51 | Ovule.S4 | |
| Aco014323.1 | AcABCG39 | (NBD-TMD)2 | LG05 | 1450 | 164.01 | 7.54 | Sepal.S2 | |
| Aco013658.1 | AcABCG41 | (NBD-TMD)2 | LG13 | 1452 | 164.64 | 7.72 | Stamen.S3 | |
| Aco015172.1 | AcABCG42 | NBD2-TMD-NBD-TMD | LG05 | 1584 | 177.88 | 8.91 | Stamen.S4 | |
| WBC | Aco010405.1 | AcABCG3 | NBD-TMD | LG03 | 727 | 80.78 | 9.09 | Root |
| Aco030876.1 | AcABCG4 | NBD-TMD | scaffold_1304 | 612 | 65.76 | 8.91 | Sepal.S3 | |
| Aco011308.1 | AcABCG5 | NBD-TMD | LG01 | 610 | 66.69 | 9.39 | fruit.S5 | |
| Aco021246.1 | AcABCG7 | NBD-TMD | LG10 | 691 | 75.26 | 8.96 | fruit.S1 | |
| Aco009154.1 | AcABCG9 | NBD-TMD | LG09 | 642 | 70.19 | 8.61 | Stamen.S3 | |
| Aco006105.1 | AcABCG10 | NBD-TMD | LG16 | 591 | 64.95 | 9.14 | Root | |
| Aco010632.1 | AcABCG11 | NBD-TMD | LG07 | 723 | 80.1 | 9.18 | Stamen.S2 | |
| Aco023881.1 | AcABCG14 | NBD | LG20 | 88 | 9.32 | 10.37 | / | |
| Aco007271.1 | AcABCG15 | NBD-TMD | LG23 | 677 | 75.25 | 9.59 | Ovule.S1 | |
| Aco020513.1 | AcABCG16 | NBD | LG01 | 283 | 31.43 | 11.09 | Leaf | |
| Aco010077.1 | AcABCG17 | NBD-TMD | LG25 | 714 | 78.57 | 8.54 | Ovule.S4 | |
| Aco001046.1 | AcABCG18 | Arf-NBD-TMD | LG02 | 896 | 100.18 | 8.27 | fruit.S7 | |
| Aco021024.1 | AcABCG22 | NBD-TMD | LG15 | 743 | 81.87 | 9.15 | Sepal.S1 | |
| Aco002328.1 | AcABCG23 | NBD-TMD | LG04 | 612 | 68.93 | 6.81 | Root | |
| Aco023879.1 | AcABCG24 | NBD | LG20 | 201 | 21.67 | 9.49 | Root | |
| Aco003255.1 | AcABCG25 | NBD-TMD | LG17 | 605 | 65.4 | 9.38 | Ovule.S7 | |
| Aco023619.1 | AcABCG26 | NBD-TMD | LG19 | 641 | 71.96 | 9.36 | Stamen.S4 | |
| Aco013155.1 | AcABCG27 | NBD-TMD | LG24 | 601 | 66.02 | 9.42 | Stamen.S3 | |
| Aco006887.1 | AcABCG28 | NBD | LG22 | 1089 | 120.53 | 9.12 | Ovule.S5 | |
| Aco007658.1 | AcABCG29 | NBD-TMD | LG08 | 721 | 79.81 | 8.84 | Flower | |
| Aco001237.1 | AcABCG30 | NBD-TMD | LG02 | 728 | 80.13 | 7.59 | Flower | |
| Aco031846.1 | AcABCG32 | NBD-TMD | scaffold_3635 | 372 | 39.56 | 8.97 | Stamen.S1 | |
| Aco004405.1 | AcABCG33 | NBD-TMD | LG05 | 605 | 64.96 | 8.82 | Sepal.S4 | |
| Aco000542.1 | AcABCG34 | NBD-TMD | LG12 | 642 | 70.76 | 10.47 | Leaf | |
| Aco010996.1 | AcABCG35 | NBD-TMD | LG04 | 707 | 77.84 | 8.43 | Sepal.S2 | |
| Aco005255.1 | AcABCG37 | NBD-TMD | LG07 | 720 | 79.28 | 8.97 | Petal.S3 | |
| Aco001503.1 | AcABCG38 | NBD-TMD | LG18 | 794 | 87.24 | 9.1 | Stamen.S3 | |
| Aco019952.1 | AcABCG40 | NBD | LG08 | 861 | 96.25 | 9.2 | Stamen.S4 | |
| Subfamily I, 9 members | ||||||||
| Aco008459.1 | AcABCI1 | NBD | LG19 | 224 | 24.87 | 9.69 | Petal.S3 | |
| Aco028846.1 | AcABCI2 | NBD | scaffold_627 | 301 | 32.04 | 8.48 | Stamen.S1 | |
| Aco018474.1 | AcABCI3 | NBD | LG21 | 431 | 48.82 | 7.17 | Stamen.S1 | |
| Aco005118.1 | AcABCI4 | NBD | LG07 | 283 | 30.25 | 8.56 | Sepal.S1 | |
| Aco001741.1 | AcABCI5 | NBD | LG18 | 307 | 33.24 | 8.68 | Stamen.S2 | |
| Aco007380.1 | AcABCI6 | NBD | LG23 | 326 | 34.26 | 6.62 | Stamen.S1 | |
| Aco006975.1 | AcABCI7 | NBD | LG22 | 291 | 32.74 | 5.48 | fruit.S4 | |
| Aco030323.1 | AcABCI8 | NBD | scaffold_1361 | 312 | 32.85 | 6.4 | Petal.S2 | |
| Aco004516.1 | AcABCI9 | NBD | LG05 | 350 | 38.23 | 8.2 | fruit.S3 | |
Columns one to nine show the subgroup names, gene transcript ID, gene name, proteins gross topology (domain, orientation, number of modules, from “-NH3” to “-COOH”), chromosome location, numbers of amino acid residues in the gene translation product, proteins size, protein isoeletric point and main expression location.