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. 2017 Dec 19;8:2150. doi: 10.3389/fpls.2017.02150

Table 1.

The ABC gene family in pineapple.

Group Transcipt ID Gene name Topology Ch Length(aa) MW(Kd) pI Main loca.
Subfamily A, 5 members
AOH Aco007263.1 AcABCA1 (TMD-NBD)2 LG23 1885 209.74 7.28 fruit.S7
ATH Aco028137.1 AcABCA2 TMD-NBD scaffold_1582 967 107.06 7.81 Flower
Aco006844.1 AcABCA3 TMD-NBD LG01 961 106.43 6.95 Stamen.S5
Aco006845.1 AcABCA4 TMD-NBD LG01 890 99.17 8.62 Ovule.S7
Aco014363.1 AcABCA5 TMD-NBD LG05 947 106.5 8.76 Flower
Subfamily B, 18 members
MDR Aco010196.1 AcABCB1 (TMD-NBD)2 LG25 1252 144.98 9.32 Ovule.S1
Aco012952.1 AcABCB2 (TMD-NBD)2 LG03 1216 139.29 9.18 Petal.S3
Aco027643.1 AcABCB3 TMD-NBD-TMD scaffold_777 992 107.44 8.91 Root
Aco016500.1 AcABCB4 (TMD-NBD)2 LG11 1613 108.46 9.03 Stamen.S4
Aco022110.1 AcABCB5 (TMD-NBD)2 LG04 1294 140.81 7.89 fruit.S4
Aco001135.1 AcABCB6 (TMD-NBD)2 LG02 1239 136.8 8.75 fruit.S4
Aco018951.1 AcABCB7 (TMD-NBD)2 LG12 1258 140.34 8.97 Stamen.S2
Aco006827.1 AcABCB8 (TMD-NBD)2 LG01 1295 135.1 9.03 Stamen.S3
Aco019592.1 AcABCB9 (TMD-NBD)2 LG10 978 138.8 8.68 Flower
Aco013278.1 AcABCB10 (TMD-NBD)2 LG24 1395 139.04 8.69 Ovule.S6
Aco016496.1 AcABCB11 (TMD-NBD)2-NBD LG11 1407 174.98 6.21 Root
Aco022325.1 AcABCB12 (TMD-NBD)2 LG19 1263 135.39 8.81 fruit.S1
Aco003987.1 AcABCB19 (TMD-NBD)2 LG15 645 151.04 6.27 Stamen.S3
Aco001486.1 AcABCB20 (TMD-NBD)2 LG18 1270 155.88 6.4 Stamen.S1
Aco008863.1 AcABCB13 (TMD-NBD)2 LG09 1340 132.98 8.9 Stamen.S2
TAP Aco007808.1 AcABCB14 TMD-NBD LG21 1653 70.41 7.98 Stamen.S3
Aco017569.1 AcABCB15 TMD-(NBD)2-TMD-NBD LG09 756 179.38 6.29 fruit.S4
Aco015743.1 AcABCB16 TMD2-NBD LG09 741 82.03 9.05 Ovule.S4
Aco017326.1 AcABCB17 TMD-NBD LG01 755 82.29 8.86 Ovule.S2
ATM Aco011166.1 AcABCB18 TMD-NBD LG04 309 82.67 9.32 fruit.S7
Subfamily C, 16 members
Aco009750.1 AcABCC1 (TMD-NBD)2 LG10 1545 170.6 7.71 Flower
Aco014828.1 AcABCC2 (TMD-NBD)2 LG14 1543 173.73 6.83 Ovule.S1
Aco027927.1 AcABCC3 (TMD-NBD)2 scaffold_1613 1544 170.76 8.16 Stamen.S5
Aco019200.1 AcABCC4 (TMD-NBD)2 LG13 1404 154.1 6.18 Stamen.S4
Aco010163.1 AcABCC5 (TMD-NBD)2 LG25 1522 168.42 8.27 Flower
Aco019507.1 AcABCC6 (TMD-NBD)2 LG07 2068 228.97 7.1 Ovule.S3
Aco009944.1 AcABCC7 (TMD-NBD)2 LG10 1463 163.87 8.43 Stamen.S4
Aco015193.1 AcABCC8 (TMD-NBD)2 LG05 1463 163.62 8.82 fruit.S3
Aco000353.1 AcABCC9 (TMD-NBD)2 LG12 1491 166.33 7.94 Stamen.S5
Aco005539.1 AcABCC10 (TMD-NBD)2 LG11 1485 164.82 8.42 Stamen.S1
Aco006625.1 AcABCC11 (TMD-NBD)2 LG01 1583 177.22 8.71 Ovule.S2
Aco025745.1 AcABCC12 NBD LG01 348 39.08 5.29 Ovule.S1
Aco016941.1 AcABCC13 (TMD-NBD)2 LG02 1285 143.55 6.29 Petal.S3
Aco017858.1 AcABCC14 (TMD-NBD)2 LG23 1261 140.25 6.04 Sepal.S2
Aco012910.1 AcABCC15 (TMD-NBD)2 LG03 1514 169.94 8.6 Leaf
Aco016196.1 AcABCC16 TMD-NBD LG17 309 33.65 9.69 Ovule.S4
Subfamily D, 2 members
Aco023353.1 AcABCD1 (TMD-NBD)2 LG18 1342 149.88 9.16 Stamen.S5
Aco010685.1 AcABCD2 TND-NBD LG10 750 83.8 8.48 Stamen.S3
Subfamily E, 1 members
Aco010811.1 AcABCE1 NBD2 LG10 605 68.22 8.04 Stamen.S5
Subfamily F, 5 members
Aco010200.1 AcABCF1 NBD3 LG25 601 67.25 6.07 Petal.S3
Aco006898.1 AcABCF2 NBD3 LG22 603 67.03 6.37 Leaf
Aco009295.1 AcABCF3 NBD3 LG22 719 79.99 5.92 Stamen.S1
Aco018812.1 AcABCF4 NBD2 LG13 742 81.44 5.87 Stamen.S4
Aco000176.1 AcABCF5 NBD3 LG12 717 79.54 6.07 fruit.S2
Subfamily G,42 members
PDR Aco005449.1 AcABCG1 TMD-NBD-TMD2 LG11 1234 140.02 7.35 Sepal.S2
Aco005451.1 AcABCG2 (NBD-TMD)2 LG11 1393 157.13 8.66 Stamen.S1
Aco027149.1 AcABCG6 (NBD-TMD)2 scaffold_1231 1419 159.96 8.93 Sepal.S3
Aco009786.1 AcABCG8 (NBD-TMD)2 LG10 1347 151.89 8.83 Flower
Aco006783.1 AcABCG12 (NBD-TMD)2 LG01 1456 164.5 8.47 fruit.S5
Aco006142.1 AcABCG13 (NBD-TMD)2 LG16 1476 166.35 6.59 Sepal.S1
Aco023493.1 AcABCG19 (NBD-TMD)2 LG01 1416 160.42 7.85 Stamen.S4
Aco015369.1 AcABCG20 (NBD-TMD)2 LG23 1449 161.94 8.62 Stamen.S5
Aco021666.1 AcABCG21 (NBD-TMD)2 LG07 1282 145.07 8.65 fruit.S1
Aco009791.1 AcABCG31 (NBD-TMD)2 LG10 1452 165.01 8.77 Ovule.S7
Aco006143.1 AcABCG36 (NBD-TMD)2 LG16 1410 158.85 6.51 Ovule.S4
Aco014323.1 AcABCG39 (NBD-TMD)2 LG05 1450 164.01 7.54 Sepal.S2
Aco013658.1 AcABCG41 (NBD-TMD)2 LG13 1452 164.64 7.72 Stamen.S3
Aco015172.1 AcABCG42 NBD2-TMD-NBD-TMD LG05 1584 177.88 8.91 Stamen.S4
WBC Aco010405.1 AcABCG3 NBD-TMD LG03 727 80.78 9.09 Root
Aco030876.1 AcABCG4 NBD-TMD scaffold_1304 612 65.76 8.91 Sepal.S3
Aco011308.1 AcABCG5 NBD-TMD LG01 610 66.69 9.39 fruit.S5
Aco021246.1 AcABCG7 NBD-TMD LG10 691 75.26 8.96 fruit.S1
Aco009154.1 AcABCG9 NBD-TMD LG09 642 70.19 8.61 Stamen.S3
Aco006105.1 AcABCG10 NBD-TMD LG16 591 64.95 9.14 Root
Aco010632.1 AcABCG11 NBD-TMD LG07 723 80.1 9.18 Stamen.S2
Aco023881.1 AcABCG14 NBD LG20 88 9.32 10.37 /
Aco007271.1 AcABCG15 NBD-TMD LG23 677 75.25 9.59 Ovule.S1
Aco020513.1 AcABCG16 NBD LG01 283 31.43 11.09 Leaf
Aco010077.1 AcABCG17 NBD-TMD LG25 714 78.57 8.54 Ovule.S4
Aco001046.1 AcABCG18 Arf-NBD-TMD LG02 896 100.18 8.27 fruit.S7
Aco021024.1 AcABCG22 NBD-TMD LG15 743 81.87 9.15 Sepal.S1
Aco002328.1 AcABCG23 NBD-TMD LG04 612 68.93 6.81 Root
Aco023879.1 AcABCG24 NBD LG20 201 21.67 9.49 Root
Aco003255.1 AcABCG25 NBD-TMD LG17 605 65.4 9.38 Ovule.S7
Aco023619.1 AcABCG26 NBD-TMD LG19 641 71.96 9.36 Stamen.S4
Aco013155.1 AcABCG27 NBD-TMD LG24 601 66.02 9.42 Stamen.S3
Aco006887.1 AcABCG28 NBD LG22 1089 120.53 9.12 Ovule.S5
Aco007658.1 AcABCG29 NBD-TMD LG08 721 79.81 8.84 Flower
Aco001237.1 AcABCG30 NBD-TMD LG02 728 80.13 7.59 Flower
Aco031846.1 AcABCG32 NBD-TMD scaffold_3635 372 39.56 8.97 Stamen.S1
Aco004405.1 AcABCG33 NBD-TMD LG05 605 64.96 8.82 Sepal.S4
Aco000542.1 AcABCG34 NBD-TMD LG12 642 70.76 10.47 Leaf
Aco010996.1 AcABCG35 NBD-TMD LG04 707 77.84 8.43 Sepal.S2
Aco005255.1 AcABCG37 NBD-TMD LG07 720 79.28 8.97 Petal.S3
Aco001503.1 AcABCG38 NBD-TMD LG18 794 87.24 9.1 Stamen.S3
Aco019952.1 AcABCG40 NBD LG08 861 96.25 9.2 Stamen.S4
Subfamily I, 9 members
Aco008459.1 AcABCI1 NBD LG19 224 24.87 9.69 Petal.S3
Aco028846.1 AcABCI2 NBD scaffold_627 301 32.04 8.48 Stamen.S1
Aco018474.1 AcABCI3 NBD LG21 431 48.82 7.17 Stamen.S1
Aco005118.1 AcABCI4 NBD LG07 283 30.25 8.56 Sepal.S1
Aco001741.1 AcABCI5 NBD LG18 307 33.24 8.68 Stamen.S2
Aco007380.1 AcABCI6 NBD LG23 326 34.26 6.62 Stamen.S1
Aco006975.1 AcABCI7 NBD LG22 291 32.74 5.48 fruit.S4
Aco030323.1 AcABCI8 NBD scaffold_1361 312 32.85 6.4 Petal.S2
Aco004516.1 AcABCI9 NBD LG05 350 38.23 8.2 fruit.S3

Columns one to nine show the subgroup names, gene transcript ID, gene name, proteins gross topology (domain, orientation, number of modules, from “-NH3” to “-COOH”), chromosome location, numbers of amino acid residues in the gene translation product, proteins size, protein isoeletric point and main expression location.