Table 6.
Cell wall modification pathway genes.
| Genes*: the key or differential genes in the cell wall modification pathway | E. dermatitidis | E. spinifera |
|---|---|---|
| Chitin synthase | ||
| CHS1 Class I, CHS2 class II | HMPREF1120_06816, HMPREF1120_07981 | PV08_00820, PV08_10842 |
| CHS3 Class III | HMPREF1120_06479 | PV08_10744 |
| CHS4 Class IV | HMPREF1120_07721 | PV08_01895 |
| CHS5 Class V, CHS7 Class VII | HMPREF1120_08776, HMPREF1120_08777 | PV08_07002, PV08_07003 |
| CHS6 Class VI | HMPREF1120_09115 | PV08_07085 |
| Chitin synthase like | HMPREF1120_01791 | |
| UDP-N-acetylglucosamine 6-dehydrogenase | HMPREF1120_01790 | PV08_06692 |
| Regulation of chitin synthase activity, by analogy to S. cerevisiae | ||
| SKT5 Activator of Chs3p during vegetative growth | HMPREF1120_07720 | PV08_01896 |
| Similarity with ScSkt5, activator of Chs3 | HMPREF1120_06335 | PV08_10210 |
| Similarity with ScSkt5, activator of Chs3 | HMPREF1120_05528 | PV08_11174 |
| BNI4 scaffold protein that tethers chitin synthase III (Chs3p) to the bud neck | HMPREF1120_05249 | PV08_03080 |
| ScCHS5 Similarity with ScChs5, component of exomer complex | HMPREF1120_05359 | PV08_04423 |
| ScCHS6 Similarity with ScChs6, component of exomer complex | HMPREF1120_01856 | PV08_11343 |
| Similarity with export control protein ScChs7 | HMPREF1120_00837 | PV08_09293 |
| ScCHS7 Similarity with export control protein ScChs7 | HMPREF1120_03003 | PV08_09547 |
| Chitin modification | ||
| Cda1/2 chitin deacetylase | HMPREF1120_08023 | PV08_03824 |
| Chitin degradation | ||
| ChiA GPI anchored class III chitinase | HMPREF1120_03399 | PV08_09305 |
| Class III chitinase | HMPREF1120_02334 | PV08_02554 |
| ChiB Class V chitinase | HMPREF1120_06669 | PV08_07861 |
| Class V chitinase | HMPREF1120_03714 | |
| Chitinase | HMPREF1120_04557 | PV08_03599 |
| Chitinase | HMPREF1120_07241 | |
| NagA Extracellular N-acetyl-beta-glucosaminidase | HMPREF1120_06035 | PV08_05624 |
| NagA | HMPREF1120_06285 | PV08_06135 |
| 1,3-a-glucan synthesis and processing | ||
| AgsB/A Catalytic subunits of the 1,3-a-glucan synthase complex (GT5 and GH13) - http://www.cazy.org/ | PV08_03291, PV08_03292, PV08_03826 | |
| HMPREF1120_08319 | PV08_06861 | |
| Putative amylase; similarity with H. capsulatum Amy1 | HMPREF1120_03460 | PV08_02428 |
| 1,3-b-glucan synthesis and processing | ||
| FksA Putative catalytic subunit 1,3-b-glucan synthase complex; ScFks1-like | HMPREF1120_03476 | PV08_10508 |
| ScSMI1 Putative regulatory component 1,3-b-glucan synthesis; ScKnr4-like | HMPREF1120_04893 | PV08_03822 |
| EngA Endo-1,3-b-glucanase (GH 81-family); ScEng1-like | HMPREF1120_09022 | PV08_06894 |
| Putative exo-1,3-b-glucanase family (GH 5); related to the ScExg1-family | HMPREF1120_04506 | PV08_03500 |
| HMPREF1120_06180 | PV08_06271 | |
| Putative exo-1,3-b-glucanase family (GH 55); related to Coniothyrium minitans exo-1,3-glucanase (Cmg1) | HMPREF1120_01556 | PV08_03602, PV08_11776 |
| HMPREF1120_05230 | ||
| Bgl2-family of putative 1,3-b-transglucosylases (GH 17) proposed to be involved | HMPREF1120_00547 | PV08_01318 |
| HMPREF1120_05209 | PV08_00062 | |
| HMPREF1120_06595 | PV08_10359 | |
| HMPREF1120_08449 | PV08_01193 | |
| HMPREF1120_04141 | PV08_08282 | |
| HMPREF1120_03066 | PV08_03009 | |
| HMPREF1120_08078 | PV08_10096 | |
| Crh1-family of putative transglycosidases (GH 16);involved in crosslinking b-glucan | HMPREF1120_04931 | PV08_03356 |
| HMPREF1120_00627 | PV08_04702 | |
| HMPREF1120_07927 | PV08_07455 | |
| HMPREF1120_02703 | PV08_05520 | |
| Gas-family of putative 1,3-b-transglucosylases (GH 72) proposed to be involved in connecting the emerging 1,3-b-glucan chains to the existing b-glucan | HMPREF1120_07283 | PV08_09503 |
| HMPREF1120_01763 | PV08_11789 | |
| HMPREF1120_03477 | PV08_10507 | |
| GelG 1,3-b-glucanosyltransferase | HMPREF1120_01682 | PV08_11613 |
| SunA Sun family, involved in septation, possibly b-glucosidase activity; | HMPREF1120_01649 | PV08_06721 |
| SunB | HMPREF1120_06902 | PV08_00042 |
| Kre6 Putative transglycosidase required for 1,6-b-glucan biosynthesis | HMPREF1120_01614 | PV08_06798 |
| CelA Similarity with cellulose synthases of the GT 2 family. Putatively involved in 1,3-b-/1,4-b-glucan synthesis | HMPREF1120_04699 | PV08_00315 |
| Mlg1 Mixed-linked glucanases in C. carbonum, hydrolyze 1,3-b-/1,4-b-glucans | HMPREF1120_05299 | |
| Mlg1 | HMPREF1120_02373 | PV08_09397 |
| Mlg1 | HMPREF1120_07765 | PV08_01870 |
| HMPREF1120_09051 | PV08_07166 | |
| Other cell wall biosynthesis proteins | ||
| Endo-mannanase family (GH 76) with a putative role in GPI-CWP incorporation; | HMPREF1120_04431 | PV08_03378 |
| HMPREF1120_03513 | PV08_10453 | |
| HMPREF1120_05522 | PV08_11178 | |