Table 1.
PCR sample no. | Number of reads with 99.9% predicted accuracy | Mean number of passes | Number of movies | SMRT cell no. | Number of PacBio CCS2 analyzed reads | Number of scFv candidates in analyzed reads | % of scFv candidates in analyzed reads, i.e., coverage | Number of filtered-in reads | % of scFv in filtered-in reads, i.e., coverage | % of scFv in analyzed reads, i.e., coverage |
---|---|---|---|---|---|---|---|---|---|---|
s1 | 91,828 | 24 | 3 | 1 | 29,224 | 25,419 | 86.98 | 22,906 | 90.11 | 78.38 |
2 | 32,240 | 28,120 | 87.22 | 25,228 | 89.72 | 78.25 | ||||
3 | 30,364 | 26,496 | 87.26 | 23,799 | 89.82 | 78.38 | ||||
s2 | 129,640 | 23 | 4 | 4 | 34,082 | 29,729 | 87.23 | 26,657 | 89.67 | 78.21 |
5 | 33,510 | 29,213 | 87.18 | 26,407 | 90.39 | 78.80 | ||||
6 | 31,980 | 27,874 | 87.16 | 25,032 | 89.80 | 78.27 | ||||
7 | 30,068 | 26,289 | 87.43 | 23,695 | 90.13 | 78.80 | ||||
s3 | 115,446 | 24 | 4 | 8 | 34,890 | 30,183 | 86.51 | 26,990 | 89.42 | 77.36 |
9 | 29,373 | 25,314 | 86.18 | 22,468 | 88.76 | 76.49 | ||||
10 | 26,465 | 22,776 | 86.06 | 20,044 | 88.00 | 75.74 | ||||
11 | 24,718 | 21,358 | 86.41 | 18,741 | 87.75 | 75.82 | ||||
s4 | 113,644 | 24 | 4 | 12 | 25,128 | 21,881 | 87.08 | 19,120 | 87.38 | 76.09 |
13 | 23,693 | 20,515 | 86.59 | 17,756 | 86.55 | 74.94 | ||||
14 | 32,293 | 28,093 | 86.99 | 24,762 | 88.14 | 76.68 | ||||
15 | 32,530 | 28,395 | 87.29 | 25,054 | 88.23 | 77.02 | ||||
Total | 450,558 | 450,558 | 391,655 | 86.93 | 348,659 | 89.02 | 77.38 |
Each CCS read counts as “1× coverage” over the scFv molecules of interest. The coverage is given in percentage of the scFv of interest (analyzed reads, filtered-in reads and analyzed reads).