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. 2017 Dec 19;20(4):393–399. doi: 10.4048/jbc.2017.20.4.393

Table 7. Comparison of RNA quality of FFPE samples between center A and center B using NGS.

Center RNA quality ACTB GAPDH ESR-1
Center A (n = 50) Success rate, % (n) 100 (50/50) 100 (50/50) 100 (50/50)
Average FPKM 31,313.31 16,300.13 4,802.48
Center B (n = 46) Success rate, % (n) 93.5 (43/46) 93.5 (43/46) 93.5 (43/46)
Average FPKM 51,369.42 6,114.09 5,569.75

FFPE=formalin-fixed paraffin-embedded; NGS=next-generation sequencing; FPKM=fragments per kilobase of exon per million fragments mapped.