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. 2017 Dec 27;9:119. doi: 10.1186/s13073-017-0507-0

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 4 — Phylogenetic distribution of genes encoding antibiotic resistance and virulence factors. Note that only virulence factors that were variably present in the population are shown, meaning that some of the well-known virulence factors, e.g. sagA and atlAEfm, present in every isolate are not shown. The sequence file for the virulence factors studied here is provided in Additional file 1. Note that the vanB-containing isolate was phenotypically susceptible to vancomycin due to lack of vanR _B and vanS _B