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. 2017 Dec 19;4:170184. doi: 10.1038/sdata.2017.184

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Copyright © 2017, The Author(s)

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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(a) General information about the uploaded genotype (VCF or BED) as well as the status of the parsing is displayed. (b,c) The results of the SNPmatch analysis are displayed in separate panels for two major SNP databases (‘1,001 Genomes’ and ‘RegMap’). A pie-chart highlights the overlap between the user-provided genotype and the SNP database. Depending on the analysis result, either a histogram or a column chart is displayed of the top matches. A table and map provide additional information about the highest matched strains. (d) If SNPmatch detects that the sample is possibly an individual of an F2 individual, an additional analysis starts automatically and, in case the cross is confirmed, information about the parents are displayed.