Table 1.
Genome and gene sequences of kinetoplastids tested for the presence of RNAi-associated genes
| Strain | Resource | Genome accession number | GenBank accession numbers for RNAi-related genes
|
||
|---|---|---|---|---|---|
| AGO1 | DCL1 | DCL2 | |||
| Leishmania major Friedlin. | Ref. strain | GCA_000002725 | |||
| L. braziliensis M2904 | Ref. strain | GCA_000002845 | ACI22628 | XP001565111 | XP_001565607 |
| Crithidia fasciculata Cf-Cl | Ref. strain | GCA_000331325 | ACD91648 | KY351826 | KY351827 |
| C. acanthocephali | TCC037E | AUXI00000000 | KT377047 | KT377048 | KT377049 |
| Trypanosoma cruzi G | pp | ||||
| T. cruzi CL | pp | ||||
| T. cruzi 1994 (Tcbat) | TCC1994 | pp | |||
| T. cruzi marinkellei | TCC 344 | pp | |||
| T. conorhini | TCC025E | pp | KT377056 | KT377057 | KT377058 |
| T. lewisi | TCC034 | pp | |||
| T. dionisii | TCC211 | pp | |||
| T. rangeli AM80 | TCC086 | pp | KT377059 | KT377060 | KT377061 |
| T. erneyi | TCC1946 | pp | |||
| T. brucei b. TREU927 | Ref. strain | GCA_000002445 | XP_823303 | XP_847070 | XP_843717 |
| T. b. gambiense DAL972 | Ref. strain | GCA_000210295 | XP_011778481 | XP_011775511 | XP_001565607 |
| Bodo sp | ATCC50149 | pp | KY305538 | KY308193 | |
| Endotrypanum schaudinni | TCC224 | pp | |||
| Leptomonas costaricensis BR | TCC169E | pp | KT377053 | KT377054 | KT377055 |
| Parabodo caudatus | ATCC30905 | pp | |||
| Phytomonas sp. Jma | TCCxxx | pp | |||
| Angomonas deanei | TCC036E | AUXM00000000 | KT377043 | KT377044 | |
| A. desouzai | TCC079E | AUXL00000000 | KT377045 | KT377046 | |
| Strigomonas galati | TCC219 | AUXN00000000 | |||
| S. culicis | TCC012E | AUXH00000000 | |||
| S. oncopelti | TCC 290E | AUXK00000000 | |||
| Herpetomonas muscarum | TCC001E | AUXJ00000000 | KT377050 | KT377051 | KT377052 |
Abbreviations used in the Table: pp—genome sequences were generously provided pre-publication by the Euglenozoan Genome Consortium (see Acknowledgements)
Genome sequences of strains with shown accession numbers were previously published (Alves et al. 2013a, b). Other sequences used herein were obtained from TriTrypDB (Aslett et al. 2010)
Strains of L. major (MHOM/IL/80/Friedlin), L. braziliensis (MHOM/MHOM/BR/75/M2904), C. fasciculata (CFACl_0070011200), T. brucei brucei TREU927 (clone derived from GPAL/KE/70/EATRO 1534) and T. brucei gambiense DAL972 (clone derived from MHOM/CI/86/DAL972) were used as a reference in this work