Table 3. Contributions of five mutations and genomic regions to oviduct trait.
| SNP | rs318027552 | rs80668034 | rs312570847 | rs80715313 | rs312614123 | |
|---|---|---|---|---|---|---|
| GGA | 1 | 4 | 4 | 8 | 2 | |
| Position (bp) | 170318652 | 74034095 | 75146457 | 4917630 | 55157730 | |
| Gene symbol | CKAP2 | CCKAR | NCAPG | GORAB | IGFBP3 | |
| Location | U88.12Kb | D331.64Kb | U1.31Mb | D7.34Kb | D38.59Kb | |
| EA/AA | G/A | A/G | C/T | C/T | T/C | |
| MAF | 0.341 | 0.16 | 0.065 | 0.323 | 0.16 | |
| OL | beta (SE) | −0.315(0.049) | 0.276(0.060) | −0.288(0.062) | ||
| CPV (%) | 4.45 | 1.97 | 2.05 | |||
| P-value | 1.23E-10 | 5.76E-06 | 3.35E-06 | |||
| OW | beta (SE) | −0.311(0.049) | 0.313(0.060) | 0.449(0.087) | 0.210(0.042) | |
| CPV (%) | 4.23 | 2.48 | 2.24 | 1.71 | ||
| P-value | 2.52E-10 | 2.24E-07 | 2.91E-07 | 5.03E-07 | ||
Abbreviations: SNP = single nucleotide polymorphism; GGA = Gallus gallus chromosome; EA = effect allele (minor allele); AA = alternative allele (major allele); MAF = minor allele frequency; OW = oviduct weight; OL = oviduct length; EA = estimated allelic substitution effect per copy of the effect allele; SE = standard error of the beta, which indicates the effect size of minor alleles; CPV = contribution to phenotypic variance (%).