Table 1.
Detailed information on 22 modelled TaWRKY proteins
| Sl. no. | TaWRKY protein | Accession no. | Conserved WRKY domain sequence | WRKY group | Target region | Target length | Template PDB ID | Template region | E value | GA341 | z-DOPE |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | TaWRKY46 | CJ928769 | WRKYGQK | IIc | 1–61 | 154 | 2ayd | 306–366 | 6e−10 | 1 | − 3878.1 |
| 2. | TaWRKY47 | GH726468 | WRKYGQK | IId | 80–140 | 150 | 2ayd | 304–363 | 0 | 1 | − 0.73 |
| 3. | TaWRKY48 | GH721668 | WRKYGQK | IId | 129–189 | 199 | 2ayd | 304–363 | 0 | 1 | − 0.73 |
| 4. | TaWRKY49 | DR741555 | WKKYGQK | IIc | 66–103 | 137 | 2dic | 54–93 | 0.047 | 0.12 | 0.64 |
| 5. | TaWRKY50 | DR741560 | WRKYGQK | IIIb | 83–211 | 269 | 4ke2 | 26–151 | 0 | 0.01 | − 0.13 |
| 6. | TaWRKY51 | CJ540255 | WRKYGQK | IIc | 72–159 | 156 | 1wj2 | 29–86 | 1e26 | 0 | − 3835.9 |
| 7. | TaWRKY52 | DR733802 | WKKYGQK | IIc | 65–102 | 134 | 2dic | 54–93 | 8e−12 | 0.12 | − 4187.5 |
| 8. | TaWRKY53 | DR731588 | WRKYGQK | IIc | 77–131 | 154 | 2ayd | 304–361 | 0 | 1 | − 0.23 |
| 9. | TaWRKY54 | HX150922 | WRKYGKK | IIc | 120–188 | 215 | 2ayd | 294–366 | 0 | 0.99 | − 0.52 |
| 10. | TaWRKY55 | HX153398 | WRKYGKK | IIc | 107–176 | 203 | 2ayd | 294–366 | 0 | 1 | − 0.73 |
| 11. | TaWRKY56 | HX157194 | WRKYGKK | IIc | 103–175 | 220 | 2ayd | 293–367 | 0 | 1 | − 0.01 |
| 12. | TaWRKY57 | CJ583190 | WRKYGQK | IIc | 75–140 | 171 | 2ayd | 294–363 | 0 | 1 | − 0.46 |
| 13 | TaWRKY58 | CK213748 | WRKYGQK | IIIa | 113–177 | 223 | 2ayd | 306–368 | 0.000063 | 0.77 | 0.32 |
| 14. | TaWRKY59 | HX002635 | WRKYGQK | IId | 51–111 | 121 | 2ayd | 304–363 | 0 | 1 | − 0.73 |
| 15. | TaWRKY60 | HX157222 | WRKYGKK | IIc | 76–149 | 194 | 2ayd | 293–367 | 0 | 1 | − 0.14 |
| 16. | TaWRKY61 | CJ642031 | WRKYGQK | IId | 80–140 | 148 | 2ayd | 304–363 | 0 | 1 | − 0.92 |
| 17. | TaWRKY62 | BE404156 | WRKYGEK | IIIb | 42–128 | 174 | 2ayd | 240–325 | 4e−09 | 0.29 | − 3847.7 |
| 18. | TaWRKY63 | DR741654 | WRKYGQK | IIIa | 117–175 | 270 | 2ayd | 306–361 | 0 | 0.78 | − 0.3 |
| 19. | TaWRKY64 | CV778409 | WRKYGQK | IIIa | 20–75 | 205 | 2ayd | 105–160 | 3e−14 | 0.68 | − 5105.5 |
| 20. | TaWRKY65 | DR741684 | WRKYGQK | IIIa | 117–175 | 265 | 2ayd | 306–361 | 0 | 0.78 | − 0.73 |
| 21. | TaWRKY66 | DR731931 | WRKYGQK | IIc | 49–113 | 117 | iwj2 | 399–466 | 0 | 1 | 0.64 |
| 22. | TaWRKY67 | DR741779 | WRKYGQK | IIIa | 20–61 | 270 | 2ayd | 105–146 | 7e−15 | 0.46 | − 3891.4 |
GA341 is a model score derived from statistical potentials and value > 0.7 indicates a reliable model, i.e. > 95% probability of having the correct fold. DOPE score is an atomic distance-dependent statistical score
The more negative values indicate better models