Table 1.
AtLBR-2-dependent up-regulated 65 genes after pLPS treatment
| Accession | Description | Log2FC | Ref. |
|---|---|---|---|
| AT2G14610 | Pathogenesis-related protein 1 (PR1)* | −5.493297 | [43] |
| AT3G23120 | Receptor like protein 38 (RLP38)* | −4.553003 | [44] |
| AT3G21500 | 1-deoxy-D-xylulose 5-phosphate synthase 1 (DXPS1) | −4.454822 | ― |
| AT2G30770 | Putative cytochrome P450 (CYP71A13)* | −3.876201 | [17] |
| AT1G61800 | Glucose-6-phosphate/phosphate transporter 2 (GPT2)* | −3.440655 | [45, 46] |
| AT1G21320 | Nucleotide binding protein | −3.423526 | ― |
| AT2G14560 | Late upregulated in response to Hyaloperonospora parasitica 1 (LURP1)* | −3.420434 | [47] |
| AT4G35180 | LYS/HIS transporter 7 (LHT7)* | −3.326263 | [44, 46] |
| AT2G29350 | Senescence-associated gene 13 (SAG13)* | −3.152003 | [48] |
| AT4G04510 | Cysteine-rich receptor-like kinase (RLK) 38 (CRK38)* | −3.124063 | [49] |
| AT2G24850 | Tyrosine aminotransferase 3 (TAT3)* | −2.935669 | [10] |
| AT2G18660 | Plant natriuretic peptide A (PNP-A)* | −2.824188 | [50] |
| AT5G24200 | Alpha/beta-Hydrolases superfamily protein* | −2.675765 | [51] |
| AT2G04070 | Multidrug and Toxin Extrusion (MATE) efflux family protein | −2.651088 | ― |
| AT3G22235 | Pathogen and circadian controlled 1 (PCC1) | −2.612637 | ― |
| AT4G12470 | Azelaic acid induced 1 (AZI1)* | −2.593354 | [52] |
| AT1G33960 | avrRpt2-induced gene 1 (AIG1)* | −2.454032 | [53] |
| AT1G65500 | Uncharacterized protein | −2.423526 | [45] |
| AT4G22470 | Lipid transfer protein (LTP) family protein* | −2.414268 | [54] |
| AT4G12490 | Lipid transfer protein* | −2.37707 | [55] |
| AT4G12480 | Early Arabidopsis aluminum induced 1 (pEARLI 1)* | −2.334243 | [56] |
| AT5G46050 | Peptide transporter 3 (PTR3)* | −2.322650 | [57] |
| AT3G28580 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | −2.314015 | ― |
| AT3G50480 | Homolog of RPW8 4 (HR4)* | −2.311148 | [10] |
| AT2G26400 | Acireductone dioxygenase 3 (ARD3) | −2.302582 | ― |
| AT1G51820 | Leucine-rich repeat protein kinase family protein* | −2.288417 | [32] |
| AT1G02920 | Glutathione S-transferase 7 (GSTF7)* | −2.267427 | [58] |
| AT1G65481 | Uncharacterized protein | −2.255667 | ― |
| AT1G43910 | P-loop containing nucleoside triphosphate hydrolases superfamily protein* | −2.252226 | [44] |
| AT4G17660 | Protein kinase superfamily protein | −2.126580 | ― |
| AT4G26200 | 1-Amino-cyclopropane-1-carboxylate synthase (ACS7) | −2.091110 | ― |
| AT3G63380 | Auto-inhibited Ca2+-ATPase 12 (ACA12)* | −2.063108 | [24, 44] |
| AT5G09470 | Dicarboxylate carriers 3 (DIC3) | −2.058293 | ― |
| AT4G12735 | Uncharacterized protein | −2.022097 | ― |
| AT2G25470 | Receptor like protein 21 (RLP21) | −2.002310 | ― |
| AT3G26210 | Putative cytochrome P450 (CYP71B23) | −1.987360 | ― |
| AT4G23130 | Cysteine-rich RLK 5 (CRK5)* | −1.985073 | [59] |
| AT2G25510 | Uncharacterized protein* | −1.984502 | [10] |
| AT5G03350 | Legume lectin family protein* | −1.980512 | [10] |
| AT3G50770 | Calmodulin-like 41 (CLM41)* | −1.936221 | [55] |
| AT4G37990 | Elicitor-activated gene 3–2 (ELI3–2)* | −1.895395 | [60] |
| AT4G00170 | Plant vesicle-associated membrane protein (VAMP) family protein | −1.809448 | ― |
| AT2G19190 | Flg22-induced RLK 1 (FRK1)* | −1.804904 | [61] |
| AT2G20720 | Pentatricopeptide repeat (PPR) superfamily protein | −1.790359 | ― |
| AT5G44390 | FAD-binding Berberine family protein | −1.785875 | ― |
| AT1G35230 | Arabinogalactan-protein 5 (AGP5)* | −1.779422 | [62] |
| AT5G53870 | Early nodulin-like protein 1 (ENODL1) | −1.774478 | ― |
| AT2G04050 | Multidrug and Toxin Extrusion (MATE) efflux family protein | −1.766112 | ― |
| AT1G02930 | Glutathione S-transferase 6 (GSTF6)* | −1.750494 | [63] |
| AT2G43620 | Chitinase family protein* | −1.717382 | [64] |
| AT1G21250 | Cell wall-associated kinase 1 (WAK1)* | −1.706512 | [10, 65] |
| AT1G80130 | Tetratricopeptide repeat (TPR)-like superfamily protein* | −1.679920 | [66] |
| AT5G44575 | Uncharacterized protein | −1.671623 | ― |
| AT5G62480 | Glutathione S-transferase TAU 9 (GSTU9) | −1.630394 | ― |
| AT5G10760 | Apoplastic, EDS1-dependent 1 (AED1)* | −1.621488 | [50] |
| AT5G24640 | Uncharacterized protein | −1.616614 | ― |
| AT5G64000 | 3′(2′),5′-bisphosphate nucleotidase (SAL2) | −1.600337 | ― |
| AT3G28540 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | −1.584674 | ― |
| AT1G05730 | Uncharacterized protein (DUF842) | −1.542038 | ― |
| AT1G26420 | FAD-binding Berberine family protein | −1.526992 | [67] |
| AT1G67520 | Lectin protein kinase family protein | −1.478748 | ― |
| AT2G26440 | Pectin methylesterase 12 (PME12)* | −1.460767 | [68] |
| AT3G26830 | Phytoalexin deficient 3 (PAD3)* | −1.409278 | [16, 69] |
| AT2G41730 | Uncharacterized protein | −1.405069 | ― |
| AT1G15520 | Pleiotropic drug resistance 12 (PDR12)* | −1.361787 | [70] |
Genes up-regulated in an AtLBR-2-dependent manner after 24 h pLPS treatment were identified (FDR < 0.01, Log2FC < −1.35). Genes, which were related to plant–pathogen interaction or to SA, are indicated by asterisks or in bold type, respectively, with references