Table 1. Quality metrics on tule elk ( Cervus canadensis nannodes) assembly, as generated with QUAST v3.0.
Metric | Tule elk assembly |
---|---|
# contigs (≥ 200 bp) | 1,367,218 |
# contigs ≥ 500 bp | 602,862 |
# contigs (≥ 1000 bp) | 460,702 |
# contigs (≥ 5000 bp) | 160,229 |
# contigs (≥ 10000 bp) | 51,790 |
# contigs (≥ 25000 bp) | 2,606 |
# contigs (≥ 50000 bp) | 36 |
Total length (≥ 200 bp) | 2,607,088,486 |
Total length (≥ 1000 bp) | 2,295,163,580 |
Total length (≥ 5000 bp) | 1,531,314,985 |
Total length (≥ 10000 bp) | 771,863,493 |
Total length (≥ 25000 bp) | 80,157,993 |
Total length (≥ 50000 bp) | 2,056,962 |
Largest contig | 72,391 |
Total length | 2,395,105,945 |
GC | 41.55% |
N50 | 6,885 |
N75 | 3,646 |
L50 | 103,346 |
L75 | 222,107 |
# N's per 100 kbp | 0 |