Table 2.
Identification and nomenclature of Dickkopf-1 (DKK1) Single Nucleotide Polymorphisms (SNPs).
SNP ID | Location | db SNP rs # ID 1 | Alleles | Nomenclature 2 | MAF 3 | HW P 4 |
---|---|---|---|---|---|---|
SNP1 | Intron 2 | rs424404921 | G > A | g.909 G > A | 0.217 | 0.0546 |
SNP2 | Intron 2 | rs411273297 | C > A | g.927 C > A | 0.217 | 0.0223 |
SNP3 | Intron 2 | rs592810220 | Del CTG | g.1049 Del CTG | 0.235 | 2.9 × 10−37 |
SNP4 | Intron 2 | rs409382156 | G > C | g.1147 G > C | 0.216 | 0.0070 |
SNP5 | Intron 2 | rs419857384 | G > T | g.1321 G > T | 0.159 | 1.2 × 10−10 |
SNP6 | Intron 3 | rs419902277 | G > A | g.2018 G > A | 0.385 | 0.4416 |
SNP7 | exon 4 | rs401363941 | G > A | g.2062 G > A | 0.327 | 0.948 |
SNP8 | 3′ UTR | rs428450289 | T > C | g.3093 T > C | 0.217 | 0.2552 |
SNP9 | 3′ UTR | rs415015281 | C > T | g.3329 C > T | 0.490 | 0.4864 |
SNP10 | 3′ Flanking Region | novel | T > C | g.4123 T > C | 0.355 | 1.2 × 10−19 |
SNP11 | 3′ Flanking Region | novel | T > C | g.4443 T > C | 0.471 | 1.3 × 10−139 |
1 db, database; rs #, reference SNP #; 2 Nomenclature, according to SNP position on the obtained DKK1 DNA sequence (GenBank accession No. JQ348893); 3 MAF, minor allele frequency; 4 HW, Hardy–Weinberg test.