Table 1.
SNP | Effect Allele | Other Allele | Mean Effect Allele Frequency | Effect Size Discovery (SE) | P Value Discovery | Effect Size Replication (SE) | P Value Replication | Effect Size Combined Analysis (SE) | P Value Combined Analysis | Direction of Effects of Individual Cohorts | I2 |
---|---|---|---|---|---|---|---|---|---|---|---|
rs35929 | a | g | 0.21 | −0.112 | 5.57×10−6 | −0.135 | 5.95×10−7 | −0.1227 | 2.11×10−11 | − − − − − − − | 35.7 |
(−0.025) | (−0.027) | (−0.183) | |||||||||
rs3824347 | g | a | 0.41 | −0.109 | 3.61×10−8 | −0.1125 | 2.02×10−6 | −0.1103 | 4.38×10−13 | − − − − − + − | 7 |
(−0.02) | (−0.024) | (−0.152) |
The effect size sign for each individual cohort in the last but one column is represented by – or +. The cohort displaying a “-” for rs35929 is LBC1936, having an effect close to 0. The last column shows the I2 value, representing the heterogeneity across cohorts.