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. 2018 Jan;24(1):49–57. doi: 10.3201/eid2401.171297

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Phylogenetic tree constructed by using partial nonstructural protein 5 (NS5) sequences of JEV isolates detected in index patient and donor blood samples, Hong Kong, China, and other JEV reference strains available in GenBank (accession numbers shown). The tree was inferred from data by using the maximum-likelihood method with bootstrap values calculated from 1,000 trees. Only bootstrap values >70% are shown. A 167-nt fragment of NS5 from each virus was used in this analysis. Labels at right indicate JEV genotypes (GI–V): JEV from patient and donor samples grouped with GI strains. Scale bar indicates estimated number of nucleotide substitutions per 20 nt. BAL, bronchoalveolar lavage; CSF, cerebrospinal fluid; JEV, Japanese encephalitis virus.