Table 3.

Default Parameters of GSMC and RPMCMC That Were Used in All Experiments, DREME Was Executed Using the Default Settings

GSMC
Parameter	Value
Max/min motif length
No. of replicas
No. of iterations
Burn-in period
IC threshold of motif
Similarity threshold of motif

RPMCMC
Parameter	Value
Max/min motif length
No. of replicas
No. of iterations
Burn-in period
Motif clustering

DREME; GSMC, Combining Parallel Gibbs Sampling with Maximal Cliques for hunting DNA Motif; IC, information content; RPMCMC.