Table 4. Total enriched and depleted GO categories in comparisons between isolates when analysis includes non-exclusive peptides.

	Enrichment factor
GO category enriched	00–0949 vs 00–6200	01–1512 vs 00–6200	00–0949 vs 00–1597	01–1512 vs 00–1597	00–6200 vs 00–1597
cellular process	0.190	0.181		0.035	0.123
primary metabolic process	0.157	0.149		0.043	0.153
cellular metabolic process	0.140	0.134		0.038	0.137
metabolic process	0.126	0.120		0.035	0.123
nitrogen compound metabolic process	0.103			0.056	0.134
catalytic activity			0.125	0.150	0.214
binding			0.117	0.187	0.267
nucleobase-containing compound metabolic process				0.091
cellular macromolecule metabolic process				0.079	0.104
macromolecule metabolic process				0.075	0.099
cellular nitrogen compound metabolic process				0.060	0.143
cellular biosynthetic process				0.059	0.141
biosynthetic process				0.054	0.129
metabolic process				0.035	0.123

Results were ordered by enrichment factor and filtered by statistical significance (Benjamini-Hochberg FDR ≤0.05).

Values > 1 indicate enrichment in the first isolate in each comparison; values < 1 indicate enrichment in the second isolate in each comparison (depletion in the first isolate in each comparison).