Table 4.
Number of Regulated Transcripts* | Number of EMT Genes among Regulated Transcripts | Number of EMT Genes among Randomly Selected Transcriptsˆ | Chi-square | P (Chi-square)‡ | Bayes Factor† | |
---|---|---|---|---|---|---|
Day 1 | 412 | 11 | 2 | 6.135 | 0.013 | 0.047 |
Day 2 | 370 | 9 | 2 | 4.39 | 0.036 | 0.111 |
Day 4 | 670 | 9 | 3 | 2.97 | 0.085 | 0.227 |
For this analysis, ‘Regulated transcripts’ are those with Padj. <0.10 and |z*| >2
Median value from 5 randomly selected sets of transcripts with the same count as the set of regulated transcripts.
P(Chi-square) is presented as a measure of statistical significance.
Bayes Factor is presented as a measure of ‘weight of evidence’ and is the likelihood of the null hypothesis divided by the likelihood of the hypothesis that EMT genes are more frequent among the regulated transcripts.