Table 2. Association between 31 variants reported in GWAS of European ancestry and self-reported doctor-diagnosed asthma in the UK Biobank study (44 003 cases and 336500 controls).
Index | SNP | Chr | Bp | Context | Effect allele | MAF | OR | P-value | Asthma h2 explained (%) |
---|---|---|---|---|---|---|---|---|---|
1 | rs662064 | 1 | 10557251 | [PEX14] | C | 0.31 | 1.04 | 9.7E-006 | 0.02 |
2 | rs4129267 | 1 | 154426264 | [IL6R] | T | 0.41 | 1.03 | 5.8E-006 | 0.02 |
3 | rs4233366 | 1 | 161159147 | PPOX-[]-ADAMTS4 | T | 0.27 | 1.04 | 4.7E-007 | 0.02 |
4 | rs1723018 | 1 | 167433420 | [CD247] | G | 0.41 | 0.95 | 5.7E-012 | 0.04 |
5 | rs6691738 | 1 | 173152036 | TNFSF18—[]-TNFSF4 | G | 0.29 | 1.04 | 5.8E-007 | 0.02 |
6 | rs2786098 | 1 | 197325908 | [CRB1] | G | 0.22 | 1.00 | 0.5827 | 0.00 |
7 | rs6683383 | 1 | 203100504 | [ADORA1] | A | 0.33 | 0.95 | 5.9E-011 | 0.04 |
8 | rs13412757 | 2 | 8458080 | [LINC00299] | A | 0.34 | 0.94 | 1.8E-013 | 0.05 |
9 | rs3771166 | 2 | 102986222 | [IL18R1] | A | 0.38 | 0.90 | 7.4E-040 | 0.15 |
10 | rs34290285 | 2 | 242698640 | [D2HGDH] | A | 0.26 | 0.89 | 1.5E-039 | 0.15 |
11 | rs73196739 | 3 | 188402471 | [LPP] | T | 0.17 | 0.94 | 4.1E-010 | 0.03 |
12 | rs4833095 | 4 | 38799710 | [TLR1] | C | 0.21 | 0.92 | 1.3E-017 | 0.06 |
13 | rs1588265 | 5 | 59369794 | [PDE4D] | G | 0.31 | 1.01 | 0.2859 | 0.00 |
14 | rs1837253 | 5 | 110401872 | SLC25A46—[]-TSLP | C | 0.26 | 1.12 | 3.4E-041 | 0.16 |
15 | rs6871536 | 5 | 131969874 | [RAD50] | C | 0.19 | 1.10 | 1.0E-024 | 0.09 |
16 | rs166079 | 5 | 141528959 | [NDFIP1] | T | 0.38 | 1.04 | 1.8E-008 | 0.03 |
17 | rs2428494 | 6 | 31322197 | [HLA-B] | A | 0.47 | 1.12 | 6.1E-055 | 0.20 |
18 | rs17843604 | 6 | 32620283 | HLA-DQA1-[]-HLA-DQB1 | T | 0.42 | 1.18 | 1.9E-105 | 0.41 |
19 | rs58521088 | 6 | 90985198 | [BACH2] | T | 0.35 | 0.93 | 2.5E-021 | 0.08 |
20 | rs6967330 | 7 | 105658451 | [CDHR3] | A | 0.17 | 1.01 | 0.2233 | 0.00 |
21 | rs7009110 | 8 | 81291879 | MIR5708—[]—ZBTB10 | C | 0.38 | 0.94 | 9.6E-018 | 0.06 |
22 | rs1342326 | 9 | 6190076 | RANBP6—[]-IL33 | C | 0.16 | 1.15 | 6.4E-048 | 0.17 |
23 | rs12413578 | 10 | 9049253 | GATA3---[]---SFTA1P | T | 0.11 | 0.86 | 1.0E-033 | 0.13 |
24 | rs7130588 | 11 | 76270683 | WNT11—[]-LRRC32 | G | 0.36 | 1.10 | 8.9E-033 | 0.12 |
25 | rs3001426 | 12 | 57509055 | [STAT6] | C | 0.45 | 1.07 | 1.4E-021 | 0.08 |
26 | rs3784099 | 14 | 68749927 | [RAD51B] | A | 0.28 | 1.06 | 1.4E-012 | 0.04 |
27 | rs11071559 | 15 | 61069988 | [RORA] | T | 0.13 | 0.91 | 7.3E-017 | 0.06 |
28 | rs744910 | 15 | 67446785 | [SMAD3] | A | 0.48 | 0.95 | 3.5E-014 | 0.05 |
29 | rs62026376 | 16 | 11228712 | [CLEC16A] | T | 0.25 | 0.92 | 7.7E-023 | 0.08 |
30 | rs7216389 | 17 | 38069949 | [GSDMB] | T | 0.48 | 1.11 | 1.7E-044 | 0.16 |
31 | rs2284033 | 22 | 37534034 | [IL2RB] | A | 0.43 | 0.97 | 4.2E-004 | 0.01 |
Total | 2.52 | ||||||||
Median | 0.06 |
Abbreviations: MAF, minor allele frequency; OR, odds ratio; h2: heritability.
Three SNPs with a P>0.05 are highlighted in gray.