Table 3.

Gene ontology analysis for the top 100 upregulated genes in the flax genotypes susceptible to Fusarium oxysporum (AP5 and TOST)

GO category	Term	Observed number of genes	Expected number of genes	p-value	FDR
GO:0002181	cytoplasmic translation	12	0.24	0	0
GO:0003735	structural constituent of ribosome	30	1.61	1.6E-32	1.3E-28
GO:0006412	translation	29	1.87	1.9E-28	9.8E-25
GO:0005198	structural molecule activity	30	2.30	1.3E-27	5.0E-24
GO:0044391	ribosomal subunit	21	1.08	8.8E-23	2.7E-19
GO:0030529	intracellular ribonucleoprotein complex	34	4.47	1.8E-22	4.7E-19
GO:0044445	cytosolic part	21	1.26	2.4E-21	5.3E-18
GO:0022625	cytosolic large ribosomal subunit	14	0.46	1.5E-18	2.8E-15
GO:0015934	large ribosomal subunit	14	0.61	2.3E-16	3.9E-13
GO:0009059	macromolecule biosynthetic process	41	11.92	5.1E-14	8.0E-11
GO:0034645	cellular macromolecule biosynthetic process	39	11.27	2.2E-13	3.1E-10
GO:1,901,576	organic substance biosynthetic process	49	19.57	4.9E-12	6.3E-09
GO:0009058	biosynthetic process	49	20.57	3.0E-11	3.6E-08
GO:0044249	cellular biosynthetic process	47	19.05	3.9E-11	4.4E-08
GO:0032991	macromolecular complex	41	15.18	2.4E-10	2.5E-07
GO:0022627	cytosolic small ribosomal subunit	7	0.32	5.9E-09	5.7E-06
GO:0005840	ribosome	11	1.28	1.1E-08	1.0E-05
GO:0044267	cellular protein metabolic process	29	9.71	4.8E-08	4.2E-05
GO:0015935	small ribosomal subunit	7	0.47	2.0E-07	1.6E-04
GO:0019538	protein metabolic process	30	11.46	5.0E-07	3.9E-04
GO:0006414	translational elongation	4	0.07	8.9E-07	6.6E-04
GO:0045460	sterigmatocystin metabolic process	4	0.13	1.2E-05	8.2E-03
GO:0045461	sterigmatocystin biosynthetic process	4	0.13	1.2E-05	8.2E-03
GO:1,901,378	organic heteropentacyclic compound biosynthetic process	4	0.18	3.5E-05	2.3E-02
GO:1,901,376	organic heteropentacyclic compound metabolic process	4	0.18	3.7E-05	2.3E-02
GO:0009403	toxin biosynthetic process	4	0.21	6.6E-05	3.9E-02
GO:0070069	cytochrome complex	3	0.10	6.8E-05	3.9E-02

Note: One gene can belong to several GO categories. FDR – false discovery rate