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. 2018 Jan 3;7:e32273. doi: 10.7554/eLife.32273

Table 4. Oligonucleotides used to make Scan Mutant 10 region gel shift probes.

Probe Sequence (5’ to 3’) Oligo name
SM10 Region 1 TCGTCCCTTTTGAAATTTTATGTAACACTC yBE 10i1 Top
GAGTGTTACATAAAATTTCAAAAGGGACGA yBE 10i1 Bottom
SM10 Region 2 CACTCAATTATATTTATGTATATGTATGCT yBE 10i2 Top
AGCATACATATACATAAATATAATTGAGTG yBE 10i2 Bottom
SM10 Region 3 ATGCTCAAAATCACCTGCCAATAACCCTGCAGG yBE 10i3 Top
CCTGCAGGGTTATTGGCAGGTGATTTTGAGCAT yBE 10i3 Bottom
SM10 Region 1 Scan Mutant gCtTaCaTgTgGcAcTgTgAgGgAcCcCgC y10i1 T Scrm
GcGgGgTcCcTcAcAgTgCcAcAtGtAaGc y10i1 B Scrm
SM10 Region 3 Scan Mutant cTtCgCcAcAgCcCaTtCaAcTcAaCaTtCcGt y10i3 T Scrm
aCgGaAtGtTgAgTtGaAtGgGcTgTgGcGaAg y10i3 B Scrm
SM10 Region 1 sub1 gggCgggCgggCAAATTTTATGTAACACTC y10i1 sub1 T
GAGTGTTACATAAAATTTGcccGcccGccc y10i1 sub1 B
SM10 Region 1 sub2 TCGTCCgggCgggCgggCTATGTAACACTC y10i1 sub2 T
GAGTGTTACATAGcccGcccGcccGGACGA y10i1 sub2 B
SM10 Region 1 sub3 TCGTCCCTTTTGgggCgggCgggCACACTC y10i1 sub3 T
GAGTGTGcccGcccGcccCAAAAGGGACGA y10i1 sub3 B
SM10 Region 1 sub4 TCGTCCCTTTTGAAATTTgggCgggCgggC y10i1 sub4 T
GcccGcccGcccAAATTTCAAAAGGGACGA y10i1 sub4 B