Primer pair
|
Primer type
|
Primer sequence
|
28KJ/28B |
Plant |
GGC GGT AAA TTC CGT CC/ |
CGT CCG TGT TTC AAG ACG |
ITS1/ ITS5.8 |
Fungal |
TCC GTA GGT GAA CCT GCG G/ |
GAG ATC CGT TGT TGA AAG TT |
16s forward/ reverse |
Nested bacterial |
5’- ACACTCTTTCCCTACACGACGCTCTTCCGATCTCCTACGGGNGGCWGCAG-3’/ |
5’- GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGACTACHVGGGTATCTAATCC-3’ |
ITS1F primer/ ITS4 |
Nested fungal |
5’- ACACTCTTTCCCTACACGACGCTCTTCCGATCTTTCGTAGGTGAACCTGCGG - 3’ |
5’-GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTTCCTCCGCTTATTGATATGC - 3’ |
|
Adapter primers |
5’-AATGATACGGCGACCACCGAGATCTACAC[55555555] ACACTCTTTCCCTACACGACGCTCTTCCGATCT-3’ |
5’-CAAGCAGAAGACGGCATACGAGAT[77777777] GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT -3’ |