Table 1.
Gene | ID | Type | Length, bp | Primers | Amplicon, bp |
CASP8 | rs3834129 | INDEL | 6 | F-5’CTCTTCAATGCTTCCTTGAGGT3’ | 249-255 |
R-5’CTGCATGCCAGGAGCTAAGTAT3’ | |||||
CYP2E1 | - | INDEL | 96 | F-5’TGTCCCAATACAGTCACCTCTTT3’ | 303-399 |
R-5’GGCTTTTATTTGTTTTGCATCTG3’ | |||||
CYP19A1 | rs11575899 | INDEL | 3 | F-5’TGCATGAGAAAGGCATCATATT3’ | 122-125 |
R-5’AAAAGGCACATTCATAGACAAAAA3’ | |||||
IL1A | rs3783553 | INDEL | 4 | F-5’TGGTCCAAGTTGTGCTTATCC3’ | 230-234 |
R-5’ACAGTGGTCTCATGGTTGTCA3’ | |||||
IL4 | rs79071878 | VNTR | 70 | F-5’AGGGTCAGTCTGGCTACTGTGT3’ | 147/217/287 |
R-5’CAAATCTGTTCACCTCAACTGC3’ | |||||
MDM2 | rs3730485 | INDEL | 40 | F-5’GGAAGTTTCCTTTCTGGTAGGC3’ | 192-232 |
R-5’TTTGATGCGGTCTCATAAATTG3’ | |||||
NFKB1 | rs28362491 | INDEL | 4 | F-5’TATGGACCGCATGACTCTATCA3’ | 366-370 |
R-5’GGCTCTGGCATCCTAGCAG3’ | |||||
PAR1 | rs11267092 | INDEL | 13 | F-5’AAAACTGAACTTTGCCGGTGT3’ | 265-277 |
R-5’GGGCCTAGAAGTCCAAATGAG3’ | |||||
TP53 | rs17878362 | INDEL | 16 | F-5’GGGACTGACTTTCTGCTCTTGT3’ | 148-164 |
R-5’GGGACTGTAGATGGGTGAAAAG3’ | |||||
TYMS | rs16430 | INDEL | 6 | F-5’ATCCAAACCAGAATACAGCACA3’ | 213-219 |
R-5’CTCAAATCTGAGGGAGCTGAGT3’ | |||||
UGT1A1 | rs8175347 | VNTR | 2 | F-5’CTCTGAAAGTGAACTCCCTGCT3’ | 133/135/137/139 |
R-5’AGAGGTTCGCCCTCTCCTAT3’ | |||||
XRCC1 | rs3213239 | INDEL | 4 | F-5’GAACCAGAATCCAAAAGTGACC3’ | 243-247 |
R-5’AGGGGAAGAGAGAGAAGGAGAG3’ |
F: Forward; INDEL: Insertion/deletion; R: Reverse; VNTR: Variable number tandem repeat.