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. 2017 Dec 28;23(48):8533–8543. doi: 10.3748/wjg.v23.i48.8533

Table 1.

Technical characteristics of the studied markers

Gene ID Type Length, bp Primers Amplicon, bp
CASP8 rs3834129 INDEL 6 F-5’CTCTTCAATGCTTCCTTGAGGT3’ 249-255
R-5’CTGCATGCCAGGAGCTAAGTAT3’
CYP2E1 - INDEL 96 F-5’TGTCCCAATACAGTCACCTCTTT3’ 303-399
R-5’GGCTTTTATTTGTTTTGCATCTG3’
CYP19A1 rs11575899 INDEL 3 F-5’TGCATGAGAAAGGCATCATATT3’ 122-125
R-5’AAAAGGCACATTCATAGACAAAAA3’
IL1A rs3783553 INDEL 4 F-5’TGGTCCAAGTTGTGCTTATCC3’ 230-234
R-5’ACAGTGGTCTCATGGTTGTCA3’
IL4 rs79071878 VNTR 70 F-5’AGGGTCAGTCTGGCTACTGTGT3’ 147/217/287
R-5’CAAATCTGTTCACCTCAACTGC3’
MDM2 rs3730485 INDEL 40 F-5’GGAAGTTTCCTTTCTGGTAGGC3’ 192-232
R-5’TTTGATGCGGTCTCATAAATTG3’
NFKB1 rs28362491 INDEL 4 F-5’TATGGACCGCATGACTCTATCA3’ 366-370
R-5’GGCTCTGGCATCCTAGCAG3’
PAR1 rs11267092 INDEL 13 F-5’AAAACTGAACTTTGCCGGTGT3’ 265-277
R-5’GGGCCTAGAAGTCCAAATGAG3’
TP53 rs17878362 INDEL 16 F-5’GGGACTGACTTTCTGCTCTTGT3’ 148-164
R-5’GGGACTGTAGATGGGTGAAAAG3’
TYMS rs16430 INDEL 6 F-5’ATCCAAACCAGAATACAGCACA3’ 213-219
R-5’CTCAAATCTGAGGGAGCTGAGT3’
UGT1A1 rs8175347 VNTR 2 F-5’CTCTGAAAGTGAACTCCCTGCT3’ 133/135/137/139
R-5’AGAGGTTCGCCCTCTCCTAT3’
XRCC1 rs3213239 INDEL 4 F-5’GAACCAGAATCCAAAAGTGACC3’ 243-247
R-5’AGGGGAAGAGAGAGAAGGAGAG3’

F: Forward; INDEL: Insertion/deletion; R: Reverse; VNTR: Variable number tandem repeat.