Table 1. Summary of the contents in mirTrans and other comparable databases/data sets.
| Database | Cell lines | miRNAs | miRNA TSSs | miRNA TSSs with literature evidence | TF-miRNA regulations | TF-miRNA regulations with literature evidence |
|---|---|---|---|---|---|---|
| mirTrans | 54 | 1513 (546 intergenic / 967 intragenic) | 35259 | 23447 | 2340406 | 2148 |
| Liu Q et al. [24] (2017) | 27 | 480 (intergenic) | 5839 | N/A | 1893 | 9 |
| de Rie D et al. [25] (2017) | 84 | 1357 (371 intergenic / 986 intragenic) | 1118 | N/A | N/A | N/A |
| ChIPBase (2016) | N/A | unknown | N/A | N/A | 273761 | None |
| DIANA-miRGen (2016) | 9 | 428 (intergenic) | 276 | None | unknown | None |
| TSmiR (2014) | 12 tissues | 116 | N/A | N/A | 2347 | None |
| CircuitsDB (2013) | N/A | 180 | N/A | N/A | 115 TFs to 180 miRNAs | None |
| miRT (2012) | N/A | 588 (206 intergenic / 382 intragenic) | 670 | None | N/A | N/A |
| TransmiR (2009) | N/A | 100 | N/A | N/A | 735 | 735 |