Table 1. Data content of rSNPBase 3.0 (as of 15 September 2017) and comparison of the current and previous versions.
| Involved SNPs in three version | rSNPBase | rVarBase | rSNPBase 3.0 |
|---|---|---|---|
| rSNPs | 22 846 898 | 87 345 304 | 117 452 549 |
| LD-proxies of rSNPs (non-rSNPs) | 2 281 874 | 1 626 737 | 2 096 231 |
| SNP related regulatory elements | |||
| Transcription factor binding regions (TFBRs) | 7 562 592 | ||
| Chromatin interactive regions (CIRs) | 212 837 | ||
| Topologically associated domains (TADs) | 38 916 | ||
| Mature microRNA (miRNA) regions | 2 794 | ||
| Predicted miRNA target sites | 384 284 | ||
| Long non-coding RNA (lncRNA) regions | 211 749 | ||
| Circular RNA (circRNA) regions | 312 673 | ||
| SNP related regulatory element-target gene (E–G) pairs | |||
| TFBR-gene pairs | 9 484 132 | ||
| CIR - gene pairs | 321 247 | ||
| TAD – gene pairs | 48 482 | ||
| miRNA - gene pairs | |||
| Experimentally supported | 37 781 | ||
| Predicted | 384 284 | ||
| lncRNA - gene pairs | 4 092 | ||
| Extend annotations | |||
| Diseases(SNP-disease pairs) | 97 896 | ||
| eQTLs (SNP-mRNA pairs) | 4 201 218 | ||