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Schematic representations of the EBI metagenomics pipeline versions 3.0 (A) and 4.0 (B). Tools and reference databases updated in each release are indicated by a magenta circle and described in detail within the text. Processing steps are indicated in the colour rounded boxes (yellow, blue, green), tools in dark grey boxes and databases in light grey boxes. Input and output files as white squares. The combined gene caller component is indicated as CGC.
