Table 1. Disease-gene association resources.
Genotype resource | Access linkage | Counts |
---|---|---|
Curated Information—data manually curated by experts or validated by experiments | ||
Orphanet | http://www.orpha.net/ | 2257 |
OMIM | http://omim.org/ | 123 |
(Online Mendelian Inheritance in Man) | ||
UniProtKB (53) | http://www.uniprot.org/ | 477 |
(UniProt Knowledgebase) | ||
ClinVar (54) | https://www.ncbi.nlm.nih.gov/clinvar/ | 938 |
GHR (55) | https://ghr.nlm.nih.gov/gene/GHR | 4398 |
(Genetics Home Reference) | ||
DisGeNET (56) | http://www.disgenet.org/ | 10 255 |
Text mined information | ||
DISEASES (57) | http://diseases.jensenlab.org/ | 515 378 |
Inferred information—predicted by protein interaction and phenotype network | ||
CIPHER (58) | http://bioinfo.au.tsinghua.edu.cn/jianglab/cipher/ | 25 969 |
(Correlating protein interaction network and phenotype network to predict disease genes) | ||
In total—total number of disease-Gene associations | 520 537 |
Counts stand for the pediatric disease and gene associations extracted from designated resources.