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. 2017 Nov 2;46(Database issue):D692–D699. doi: 10.1093/nar/gkx1036

Table 1. Public data resources utilized for the construction of MarRef, MarDB and MarCat.

Type Database URL
Sequence databases ENA, European Nucleotide Archive ebi.ac.uk/ena
UniProt, Universal Protein Resource uniprot.org
NCBI, National Center for Biotechnology Information ncbi.nlm.nih.gov
Contextual databases PATRIC, Pathosystems Resource Integration Center patricbrc.org
GOLD, Genomes OnLine Database gold.jgi.doe.gov
Taxonomic databases SILVA, SILVA high quality ribosomal RNA database arb-silva.de
NCBI Taxonomy browser ncbi.nlm.nih.gov/taxonomy
Bacterial diversity metadatabases BacDive, Bacterial Diversity Metadatabase bacdive.dsmz.de
Culture collection databases DSMZ, Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH dsmz.de
ATCC, American Type Culture Collection atcc.org
Marine organisms database WoRMS, World Register of Marine Species marinespecies.org
Web mapping service Google maps maps.google.com
Literature databases Europe PMC, Europe PubMed Central europepmc.org
PubMed ncbi.nlm.nih.gov/pubmed
doi, Digital Object Identifier System doi.org
Ontology databases BioPortal bioportal.bioontology.org
Standards MIGS/MIMS GSC, Genomic Standards Consortium gensc.org