Table 3.
Identified QTLs for the assessed salinity responsive traits
| Trait | QTL | Chr | QTL interval (Mb) | Peak position (bp) | SNP Marker | F value | p value | Marker R2 |
|---|---|---|---|---|---|---|---|---|
| PD18 | qPD18_2.1 | 2 | 24.38–24.51 | 24,382,186 | 10,224,382,186 | 18.11 | 3.53E-05 | 0.1119 |
| PD18 | qPD18_4.1 | 4 | 17.08–17.09 | 17,083,910 | 10,417,083,910 | 19.43 | 1.87E-05 | 0.1134 |
| PD18 | qPD18_11.1 | 11 | 24.64–24.65 | 24,645,753 | 11,124,645,753 | 19.92 | 1.50E-05 | 0.1174 |
| SES18 | qSES18_2.1 | 2 | 24.38–24.51 | 24,382,186 | 10,224,382,186 | 20.23 | 1.31E-05 | 0.1255 |
| SES18 | qSES18_4.1 | 4 | 17.06–17.09 | 17,083,910 | 10,417,083,910 | 19.28 | 2.01E-05 | 0.1127 |
| SES18 | qSES18_11.1 | 11 | 24.64–24.65 | 24,645,753 | 11,124,645,753 | 20.89 | 9.55E-06 | 0.1234 |
| SDW0 | qSDW0_2.1 | 2 | 6.98–7.12 | 6,992,556 | 10,206,992,556 | 16.02 | 9.29E-05 | 0.092 |
| SDW0 | qSDW0_9.1 | 9 | 7.77–7.78 | 7,779,630 | 10,907,779,630 | 8.57 | 2.95E-04 | 0.1111 |
| SNa+0 | qSNa0_2.1 | 2 | 4.79–6.56 | 5,610,544 | 10,205,610,544 | 22.43 | 4.54E-06 | 0.1283 |
| SNa+0 | qSNa0_6.1 | 6 | 27.17–29.49 | 27,397,942 | 10,627,397,942 | 19.86 | 1.52E-05 | 0.12 |
| SNa+0 | qSNa0_8.1 | 8 | 21.49–21.51 | 21,498,898 | 10,821,498,898 | 16.21 | 8.59E-05 | 0.0997 |
| SNa+0 | qSNa0_8.2 | 8 | 26.56–26.57 | 26,568,663 | 10,826,568,663 | 10.12 | 7.13E-05 | 0.1225 |
| SNa+0 | qSNa0_9.1 | 9 | 6.77–7.42 | 7,411,725 | 10,907,411,725 | 16.83 | 6.47E-05 | 0.1043 |
| SNa+12 | qSNa12_4.1 | 4 | 20.33–20.57 | 20,374,274 | 10,420,374,274 | 11.62 | 1.91E-05 | 0.1427 |
| SNa+12 | qSNa12_10.1 | 10 | 14.91–16.19 | 15,893,435 | 11,015,893,435 | 16.29 | 8.30E-05 | 0.0988 |
| SNa+D | qSNaD_5.1 | 5 | 10.28–11.25 | 10,287,595 | 10,510,287,595 | 17.9 | 3.83E-05 | 0.1062 |
| SNa+D | qSNaD_6.1 | 6 | 23.74–23.85 | 23,820,480 | 10,623,820,480 | 16.49 | 7.53E-05 | 0.0984 |
| SK+D | qSKD_1.1 | 1 | 32.96–38.59 | 38,584,909 | 10,138,584,909 | 20.12 | 1.33E-05 | 0.1155 |
| SK+D | qSKD_2.1 | 2 | 24.49–25.43 | 24,686,915 | 10,224,686,915 | 30.49 | 1.23E-07 | 0.1754 |
| SK+D | qSKD_2.2 | 2 | 28.40–28.92 | 28,694,339 | 10,228,694,339 | 24.25 | 1.97E-06 | 0.1391 |
| SK+D | qSKD_3.1 | 3 | 3.69–3.81 | 3,805,384 | 10,303,805,384 | 28.01 | 3.69E-07 | 0.1611 |
| SK+D | qSKD_4.1 | 4 | 4.49–4.72 | 4,509,563 | 10,404,509,563 | 30.72 | 4.08E-12 | 0.3525 |
| SK+D | qSKD_12.1 | 12 | 16.55–17.62 | 16,556,527 | 11,216,556,527 | 18.41 | 2.95E-05 | 0.1056 |
| SNa+/K+0 | qSNa/K0_3.1 | 3 | 3.72–3.81 | 3,805,384 | 10,303,805,384 | 29.01 | 2.37E-07 | 0.168 |
| SNa+/K+0 | qSNa/K0_11.1 | 11 | 17.62–17.63 | 17,624,102 | 11,117,624,102 | 8.4 | 3.45E-04 | 0.1012 |
| SNa+/K+D | qSNa/KD_3.1 | 3 | 23.88–24.08 | 24,079,731 | 10,324,079,731 | 15.67 | 1.10E-04 | 0.1019 |