Table 1.
Most associated nevus differentially methylated positions (n-DMPs)
| Rank | CpG | Position (hg19) | Associated gene | Location | CpG island | Beta | St. error | P-value | FDR |
|---|---|---|---|---|---|---|---|---|---|
| 1 | cg06244240 | chr17: 81058948 | – | – | Shore | 0.0052 | 0.0009 | 5.52 × 10−8 | 5% |
| 2 | cg06123942 | chr15: 45722795 | C15orf48 | 5′UTR | Island | −0.0074 | 0.0014 | 2.20 × 10−7 | 5% |
| 3 | cg25384157 | chr9: 140499131 | ARRDC1 | TSS1500 | Shore | 0.0063 | 0.0012 | 3.06 × 10−7 | 5% |
| 4 | cg11297934 | chr3:12705868 | RAF1 | TSS200 | Island | −0.0046 | 0.0009 | 1.16 × 10−6 | 10% |
| 5 | cg14762973 | chr2:187714067 | ZSWIM2 | TSS200 | Island | 0.0069 | 0.0014 | 1.49 × 10−6 | 10% |
Abbreviations: FDR, false discovery rate; TSS, transcription start site; UTR, untranslated region.