Table 2.
Basic Information of the Selected SNPs
| SNP | Chromosomal position | MAF* | Allele* | χ2b | p † | |
|---|---|---|---|---|---|---|
| Ancestral allele | Mutant allele | |||||
| rs11920109 | Chr3:7,212,686 | 0.4016 | T = 0.4272 | C = 0.5728 | 2.4271 | 0.2178 |
| rs1485175 | Chr3:7,620,789 | 0.4744 | T = 0.5437 | C = 0.4563 | 1.3677 | 0.2589 |
| rs9819783 | Chr3:7,208,213 | 0.3848 | T = 0.4272 | C = 0.5728 | 1.5317 | 0.3961 |
| rs9826579 | Chr3:7,782,371 | 0.3317 | C = 0.1408 | T = 0.8592 | 0.0185 | 0.9603 |
| rs9877154 | Chr3:7,159,406 | 0.4187 | T = 0.3932 | C = 0.6068 | 0.1975 | 0.9045 |
Hardy-Weinberg equilibrium test of all selected SNPs in the control group
bPearson chi-square test is used to test whether the SNPs in the control group is in line with Hardy-Weinberg equilibrium
*The data comes from NCBI dbSNP and 1000 Genomes Browser (CHB)
†Hardy-Weinberg Equilibrium Test of the control group by Pearson’s χ2