Table 2.
List of PCR primers used in this study with optimal amplification conditions
Virus | Primer name | Primer Sequence (5′ → 3′) | Length (bp) | Amplification condition | Reference | |||
---|---|---|---|---|---|---|---|---|
TA | Mg (mM) | Primer (μM) | BSA | |||||
NoV GI | QNIF4 | CGCTGGATGCGNTTCCAT | 8 6 |
58 | 2.0 | 0.4 | Yes | Loisy et al., 2005 |
NV1LCR | CCTTAGACGCCATCATCATTTAC | |||||||
NoV GII | COG2F | CARGARBCNATGTTYAGRTGGATGAG | 9 7 |
58 | 2.0 | 0.8 | Yes | Kageyama et al., 2003 |
COG2R | TCGACGCCATCTTCATTCACA | |||||||
EoV | EQ-1 | ACATGGTGTGAAGAGTCTATTGAGCT | 1 4 2 |
60 | 1.5 | 0.6 | Yes | Dierssen et al., 2008 |
EQ-2 | CCAAAGTAGTCGGTTCCGC | |||||||
AdV | ADV-F | GCCACGGTGGGGTTTCTAAACTT | 1 3 2 |
54 | 1.5 | 0.6 | Yes | Gunson et al., 2009 |
ADV-R | GCCCCAGTGGTCTTACATGCACATC |
aNoV GI, human norovirus genotype I; NoV GII, human norovirus genotype II; EoV, human enterovirus; AdV, human adenovirus